相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。A reverse-transcription/RNase H based protocol for depletion of mosquito ribosomal RNA facilitates viral intrahost evolution analysis, transcriptomics and pathogen discovery
Joseph R. Fauver et al.
VIROLOGY (2019)
Detection of RNA-Dependent RNA Polymerase of Hubei Reo-Like Virus 7 by Next-Generation Sequencing in Aedes aegypti and Culex quinquefasciatus Mosquitoes from Brazil
Geovani de Oliveira Ribeiro et al.
VIRUSES-BASEL (2019)
Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries
M. Asplund et al.
CLINICAL MICROBIOLOGY AND INFECTION (2019)
Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid
Steve Miller et al.
GENOME RESEARCH (2019)
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Alexander M. Piper et al.
GIGASCIENCE (2019)
Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak
L. E. Kafetzopoulou et al.
SCIENCE (2019)
Arboviral diseases and malaria in Australia, 2014-15: Annual report of the National Arbovirus and Malaria Advisory Committee
Katrina Knope et al.
COMMUNICABLE DISEASES INTELLIGENCE (2019)
Effective mosquito and arbovirus surveillance using metabarcoding
J. Batovska et al.
MOLECULAR ECOLOGY RESOURCES (2018)
Comparison of reverse-transcriptase qPCR and droplet digital PCR for the quantification of dengue virus nucleic acid
Eric Abachin et al.
BIOLOGICALS (2018)
Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index crosstalk and significantly improve sensitivity of massively parallel sequencing
Laura E. MacConaill et al.
BMC GENOMICS (2018)
Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
Maura Costello et al.
BMC GENOMICS (2018)
Computational correction of index switching in multiplexed sequencing libraries
Anton J. M. Larsson et al.
NATURE METHODS (2018)
Twenty years of surveillance for Eastern equine encephalitis virus in mosquitoes in New York State from 1993 to 2012
JoAnne Oliver et al.
PARASITES & VECTORS (2018)
Metagenomics for the study of viruses in urban sewage as a tool for public health surveillance
X. Fernandez-Cassi et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2018)
A decade of RNA virus metagenomics is (not) enough
Alexander L. Greninger
VIRUS RESEARCH (2018)
Virome of > 12 thousand Culex mosquitoes from throughout California
Mohammadreza Sadeghi et al.
VIROLOGY (2018)
Maximal viral information recovery from sequence data using VirMAP
Nadim J. Ajami et al.
NATURE COMMUNICATIONS (2018)
Metagenomic Sequencing From Mosquitoes in China Reveals a Variety of Insect and Human Viruses
Pengpeng Xiao et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2018)
Metagenomic Analysis of Flaviviridae in Mosquito Viromes Isolated From Yunnan Province in China Reveals Genes From Dengue and Zika Viruses
Pengpeng Xiao et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2018)
Discovery of Culex pipiens associated tunisia virus: a new ssRNA(1) virus representing a new insect associated virus family
Diane Bigot et al.
VIRUS EVOLUTION (2018)
Viral metagenomics of six bat species in close contact with humans in southern China
Xue-yan Zheng et al.
ARCHIVES OF VIROLOGY (2018)
West Nile virus surveillance in Europe: moving towards an integrated animal-human-vector approach
C. M. Gossner et al.
EUROSURVEILLANCE (2017)
A metagenomic assessment of viral contamination on fresh parsley plants irrigated with fecally tainted river water
X. Fernandez-Cassi et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2017)
Metagenomic arbovirus detection using MinION nanopore sequencing
Jana Batovska et al.
JOURNAL OF VIROLOGICAL METHODS (2017)
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
Runxuan Zhang et al.
NUCLEIC ACIDS RESEARCH (2017)
Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection
Robert Schlaberg et al.
ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2017)
Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel
Erin H. Graf et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
Identification and Characterization of Two Novel RNA Viruses from Anopheles gambiae Species Complex Mosquitoes
Guillaume Carissimo et al.
PLOS ONE (2016)
West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses
Joseph R. Fauver et al.
VIROLOGY (2016)
Discovery of Novel Viruses in Mosquitoes from the Zambezi Valley of Mozambique
Harindranath Cholleti et al.
PLOS ONE (2016)
Depletion of Abundant Sequences by Hybridization (DASH): using Cas9 to remove unwanted high-abundance species in sequencing libraries and molecular counting applications
W. Gu et al.
GENOME BIOLOGY (2016)
Evaluation of convenient pretreatment protocols for RNA virus metagenomics in serum and tissue samples
Toon Rosseel et al.
JOURNAL OF VIROLOGICAL METHODS (2015)
Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent
Linlin Li et al.
JOURNAL OF VIROLOGICAL METHODS (2015)
Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis
Nadia Conceicao-Neto et al.
SCIENTIFIC REPORTS (2015)
RNA shotgun metagenomic sequencing of northern California (USA) mosquitoes uncovers viruses, bacteria, and fungi
James Angus Chandler et al.
FRONTIERS IN MICROBIOLOGY (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
First isolation and characterization of a mosquito-borne orbivirus belonging to the species Umatilla virus in East Asia
Hiroko Ejiri et al.
ARCHIVES OF VIROLOGY (2014)
Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood
Kenneth G. Frey et al.
BMC GENOMICS (2014)
Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery
Richard J. Hall et al.
JOURNAL OF VIROLOGICAL METHODS (2014)
Development of a virus detection and discovery pipeline using next generation sequencing
Thien Ho et al.
VIROLOGY (2014)
Identification of Viral Pathogen Diversity in Sewage Sludge by Metagenome Analysis
Kyle Bibby et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2013)
The global distribution and burden of dengue
Samir Bhatt et al.
NATURE (2013)
Detection of Arboviruses and Other Micro-Organisms in Experimentally Infected Mosquitoes Using Massively Parallel Sequencing
Sonja Hall-Mendelin et al.
PLOS ONE (2013)
Novel Virus Discovery and Genome Reconstruction from Field RNA Samples Reveals Highly Divergent Viruses in Dipteran Hosts
Shelley Cook et al.
PLOS ONE (2013)
Depletion of Ribosomal RNA for Mosquito Gut Metagenomic RNA-seq
Phanidhar Kukutla et al.
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2013)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions
Joseph K. Pickrell et al.
BIOINFORMATICS (2011)
Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological Samples
Justine Cheval et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2011)
Viral metagenome analysis to guide human pathogen monitoring in environmental samples
K. Bibby et al.
LETTERS IN APPLIED MICROBIOLOGY (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Umatilla Virus Genome Sequencing and Phylogenetic Analysis: Identification of Stretch Lagoon Orbivirus as a New Member of the Umatilla virus Species
Manjunatha N. Belaganahalli et al.
PLOS ONE (2011)
Next Generation Sequencing Technologies for Insect Virus Discovery
Sijun Liu et al.
VIRUSES-BASEL (2011)
A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America
Alexander L. Greninger et al.
PLOS ONE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Genetic and epidemiological characterization of Stretch Lagoon orbivirus, a novel orbivirus isolated from Culex and Aedes mosquitoes in northern Australia
Chris Cowled et al.
JOURNAL OF GENERAL VIROLOGY (2009)
Accurate phylogenetic classification of variable-length DNA fragments
Alice Carolyn McHardy et al.
NATURE METHODS (2007)