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Stephen W. Eichhorn et al.
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Aleksandra Helwak et al.
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Maria D. Paraskevopoulou et al.
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C. Fabian Flores-Jasso et al.
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Liang Meng Wee et al.
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ViennaRNA Package 2.0
Ronny Lorenz et al.
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Jean Hausser et al.
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Hakim Tafer et al.
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J Brennecke et al.
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BP Lewis et al.
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