相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The effect of 16S rRNA region choice on bacterial community metabarcoding results
Yu. S. Bukin et al.
SCIENTIFIC DATA (2019)
Microbiota in the apical root canal system of tooth with apical periodontitis
Wenhao Qian et al.
BMC GENOMICS (2019)
Consistent and correctable bias in metagenomic sequencing experiments
Michael R. McLaren et al.
ELIFE (2019)
Detection of the unknown components of the oral microflora of teeth with periapical radiolucencies in a Turkish population using next-generation sequencing techniques
E. Iriboz et al.
INTERNATIONAL ENDODONTIC JOURNAL (2018)
Metagenomic study of bacterial microbiota in persistent endodontic infections using Next-generation sequencing
G. Sanchez-Sanhueza et al.
INTERNATIONAL ENDODONTIC JOURNAL (2018)
Microbial Analysis of Endodontic Infections in Root-filled Teeth with Apical Periodontitis before and after Irrigation Using Pyrosequencing
Homan Zandi et al.
JOURNAL OF ENDODONTICS (2018)
Selection of validated hypervariable regions is crucial in 16S-based microbiota studies of the female genital tract
Simon Graspeuntner et al.
SCIENTIFIC REPORTS (2018)
Apical periodontitis: preliminary assessment of microbiota by 16S rRNA high throughput amplicon target sequencing
Federico Mussano et al.
BMC ORAL HEALTH (2018)
Systematic evaluation of error rates and causes in short samples in next-generation sequencing
Franziska Pfeiffer et al.
SCIENTIFIC REPORTS (2018)
Impact of DNA extraction method and targeted 16S-rRNA hypervariable region on oral microbiota profiling
Fei Teng et al.
SCIENTIFIC REPORTS (2018)
Root Microbiota in Primary and Secondary Apical Periodontitis
Serge Bouillaguet et al.
FRONTIERS IN MICROBIOLOGY (2018)
New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract
Isabel F. Escapa et al.
MSYSTEMS (2018)
The mycobiome of root canal infections is correlated to the bacteriome
Ilona F. Persoon et al.
CLINICAL ORAL INVESTIGATIONS (2017)
Analysis of bacterial community profiles of endodontically infected primary teeth using pyrosequencing
Kwan Hee Yun et al.
INTERNATIONAL JOURNAL OF PAEDIATRIC DENTISTRY (2017)
FISHing for gutta-percha-adhered biofilms in purulent post-treatment apical periodontitis
M. Zehnder et al.
MOLECULAR ORAL MICROBIOLOGY (2017)
Pyrosequencing Analysis of Cryogenically Ground Samples from Primary and Secondary/Persistent Endodontic Infections
Cangul Keskin et al.
JOURNAL OF ENDODONTICS (2017)
Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
Rashmi Sinha et al.
NATURE BIOTECHNOLOGY (2017)
Towards standards for human fecal sample processing in metagenomic studies
Paul I. Costea et al.
NATURE BIOTECHNOLOGY (2017)
Optimizing methods and dodging pitfalls in microbiome research
Dorothy Kim et al.
MICROBIOME (2017)
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?
Monika Balvociute et al.
BMC GENOMICS (2017)
Coming of age: ten years of next-generation sequencing technologies
Sara Goodwin et al.
NATURE REVIEWS GENETICS (2016)
Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples
Jennifer J. Barb et al.
PLOS ONE (2016)
Dancing with the Stars: How Choreographed Bacterial Interactions Dictate Nososymbiocity and Give Rise to Keystone Pathogens, Accessory Pathogens, and Pathobionts
George Hajishengallis et al.
TRENDS IN MICROBIOLOGY (2016)
Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples
Angela Glassing et al.
GUT PATHOGENS (2016)
Microbiome in the Apical Root Canal System of Teeth with Post-Treatment Apical Periodontitis
Jose F. Siqueira et al.
PLOS ONE (2016)
Endodontic medicine: connections between apical periodontitis and systemic diseases
J. J. Segura-Egea et al.
INTERNATIONAL ENDODONTIC JOURNAL (2015)
Comparison of Bacterial Community Composition of Primary and Persistent Endodontic Infections Using Pyrosequencing
Giorgos N. Tzanetakis et al.
JOURNAL OF ENDODONTICS (2015)
Microbiomes of Endodontic-Periodontal Lesions before and after Chemomechanical Preparation
Brenda P. F. A. Gomes et al.
JOURNAL OF ENDODONTICS (2015)
On the dynamics of root canal infections-what we understand and what we don't
Matthias Zehnder et al.
VIRULENCE (2015)
Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data
Jake Jervis-Bardy et al.
MICROBIOME (2015)
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
Susannah J. Salter et al.
BMC BIOLOGY (2014)
The Effects of Propidium Monoazide Treatment on the Measured Composition of Polymicrobial Biofilms after Treatment with Chlorhexidine
R. A. M. Exterkate et al.
CARIES RESEARCH (2014)
Highly Diverse Microbiota in Dental Root Canals in Cases of Apical Periodontitis (Data of Illumina Sequencing)
Veiko Vengerfeldt et al.
JOURNAL OF ENDODONTICS (2014)
Identification of Synergistetes in endodontic infections
Claudia do Cabo Fernandes et al.
MICROBIAL PATHOGENESIS (2014)
Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale
Thomas S. B. Schmidt et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Mobile Microbiome: Oral Bacteria in Extra-oral Infections and Inflammation
Y. W. Han et al.
JOURNAL OF DENTAL RESEARCH (2013)
Comparison of Efficacy of Pulverization and Sterile Paper Point Techniques for Sampling Root Canals
Kenny T. Tran et al.
JOURNAL OF ENDODONTICS (2013)
Infection in a Complex Network of Apical Ramifications as the Cause of Persistent Apical Periodontitis: A Case Report
Michael Arnold et al.
JOURNAL OF ENDODONTICS (2013)
Microbial Analysis in Primary and Persistent Endodontic Infections by Using Pyrosequencing
Bo-Young Hong et al.
JOURNAL OF ENDODONTICS (2013)
High throughput sequencing methods and analysis for microbiome research
Julia M. Di Bella et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2013)
DNase I and Proteinase K eliminate DNA from injured or dead bacteria but not from living bacteria in microbial reference systems and natural drinking water biofilms for subsequent molecular biology analyses
Jessica Varela Villarreal et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2013)
Comparison of the Bacterial Composition and Structure in Symptomatic and Asymptomatic Endodontic Infections Associated with Root-Filled Teeth Using Pyrosequencing
Annette Carola Anderson et al.
PLOS ONE (2013)
Microbial transformation from normal oral microbiota to acute endodontic infections
William W. L. Hsiao et al.
BMC GENOMICS (2012)
Frequency and distribution of root-filled teeth and apical periodontitis in an adult population of Barcelona, Spain
Jose Lopez-Lopez et al.
INTERNATIONAL DENTAL JOURNAL (2012)
Ecology of the microbiome of the infected root canal system: a comparison between apical and coronal root segments
A. R. Ozok et al.
INTERNATIONAL ENDODONTIC JOURNAL (2012)
Bacterial Flora of Dental Periradicular Lesions Analyzed by the 454-Pyrosequencing Technology
Mohamed H. Saber et al.
JOURNAL OF ENDODONTICS (2012)
Association among Oral Health, Apical Periodontitis, CD14 Polymorphisms, and Coronary Heart Disease in Middle-aged Adults
Damiano Pasqualini et al.
JOURNAL OF ENDODONTICS (2012)
Experimental and analytical tools for studying the human microbiome
Justin Kuczynski et al.
NATURE REVIEWS GENETICS (2012)
Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance
Steven W. Kembel et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Pyrosequencing Analysis of the Apical Root Canal Microbiota
Jose F. Siqueira et al.
JOURNAL OF ENDODONTICS (2011)
Comparing the Bacterial Diversity of Acute and Chronic Dental Root Canal Infections
Adriana L. Santos et al.
PLOS ONE (2011)
The Cochrane Collaboration's tool for assessing risk of bias in randomised trials
Julian P. T. Higgins et al.
BMJ-BRITISH MEDICAL JOURNAL (2011)
Analyzing Endodontic Infections by Deep Coverage Pyrosequencing
L. Li et al.
JOURNAL OF DENTAL RESEARCH (2010)
Persistence of dead-cell bacterial DNA in ex vivo root canals and influence of nucleases on DNA decay in vitro
Malin Brundin et al.
ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2010)
Defining the healthy core microbiome of oral microbial communities
Egija Zaura et al.
BMC MICROBIOLOGY (2009)
The mysterious appearance of enterococci in filled root canals
M. Zehnder et al.
INTERNATIONAL ENDODONTIC JOURNAL (2009)
Diversity of Endodontic Microbiota Revisited
J. F. Siqueira et al.
JOURNAL OF DENTAL RESEARCH (2009)
Ultrastructural Examination of Failed Molar Retreatment with Secondary Apical Periodontitis: An Examination of Endodontic Biofilms in an Endodontic Retreatment Failure
Gary B. Carr et al.
JOURNAL OF ENDODONTICS (2009)
Histologic Investigation of Root Canal-treated Teeth with Apical Periodontitis: A Retrospective Study from Twenty-four Patients
Domenico Ricucci et al.
JOURNAL OF ENDODONTICS (2009)
Metagenomic study of the oral microbiota by Illumina high-throughput sequencing
Vladimir Lazarevic et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2009)
Community as the unit of pathogenicity: An emerging concept as to the microbial pathogenesis of apical periodontitis
Jose F. Siqueira et al.
ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2009)
Preferred Reporting Items for Systematic Reviews and Meta-Analyses: The PRISMA Statement
David Moher et al.
PLOS MEDICINE (2009)
Distinctive features of the microbiota associated with different forms of apical periodontitis
José F. Siqueira Jr et al.
Journal of Oral Microbiology (2009)
Root Canal Microbiota of Teeth with Chronic Apical Periodontitis
I. N. Rocas et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2008)
Pyrosequencing analysis of the Oral Microflora of healthy adults
B. J. F. Keijser et al.
JOURNAL OF DENTAL RESEARCH (2008)
On the issue of uncultivated bacteria and dead cell detection by molecular methods: Reply to Dr. Nair's commentary
Jose F. Siqueira
ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2008)
Molecular analysis of the root canal microbiota associated with endodontic treatment failures
M. Sakamoto et al.
ORAL MICROBIOLOGY AND IMMUNOLOGY (2008)
Abusing technology? Culture-difficult microbes and microbial remnants
P. N. R. Nair
ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2007)
Quantification and characterization of Synergistes in endodontic infections
M. E. Vianna et al.
ORAL MICROBIOLOGY AND IMMUNOLOGY (2007)
Use of propidium monoazide for live/dead distinction in microbial ecology
Andreas Nocker et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Molecular detection and identification of Synergistes phylotypes in primary endodontic infections
J. F. Siqueira et al.
ORAL DISEASES (2007)
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
Rita Sipos et al.
FEMS MICROBIOLOGY ECOLOGY (2007)
Bacterial community profiles of endodontic abscesses from Brazilian and USA subjects as compared by denaturing gradient gel electrophoresis analysis
J. C. Machado de Oliveira et al.
ORAL MICROBIOLOGY AND IMMUNOLOGY (2007)
Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells
Andreas Nocker et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2006)
Microbial diversity in the deep sea and the underexplored rare biosphere
Mitchell L. Sogin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Identification of Enterococcus faecalis in root-filled teeth with or without periradicular lesions by culture-dependent and -independent approaches
G. O. Zoletti et al.
JOURNAL OF ENDODONTICS (2006)
Real-time quantitative polymerase chain reaction and culture analyses of Enterococcus faecalis in root canals
C Sedgley et al.
JOURNAL OF ENDODONTICS (2006)
Uncultivated phylotypes and newly named species associated with primary and persistent endodontic infections
JF Siqueira et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Exploiting molecular methods to explore endodontic infections: Part 2 - Redefining the endodontic microbiota
JF Siqueira et al.
JOURNAL OF ENDODONTICS (2005)
Viridans streptococci in endocarditis and neutropenic sepsis: biofilm formation and effects of antibiotics
E Presterl et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2005)
Prevalence of apical periodontitis and frequency of root-filled teeth in an adult Spanish population
A Jiménez-Pinzón et al.
INTERNATIONAL ENDODONTIC JOURNAL (2004)
Polymerase chain reaction identification of microorganisms in previously root-filled teeth in a South Korean population
IN Rôças et al.
JOURNAL OF ENDODONTICS (2004)
Genetic analyses from ancient DNA
S Paabo et al.
ANNUAL REVIEW OF GENETICS (2004)
Association of Enterococcus faecalis with different forms of periradicular diseases
IN Rôças et al.
JOURNAL OF ENDODONTICS (2004)
Polymerase chain reaction-based analysis of microorganisms associated with failed endodontic treatment
JF Siqueira et al.
ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2004)
Periapical health and treatment quality assessment of root-filled teeth in two Canadian populations
NN Dugas et al.
INTERNATIONAL ENDODONTIC JOURNAL (2003)
Microorganisms from canals of root-filled teeth with periapical lesions
ET Pinheiro et al.
INTERNATIONAL ENDODONTIC JOURNAL (2003)
Endodontic infections: Concepts, paradigms, and perspectives
JF Siqueira et al.
ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2002)
Bacterial diversity in human subgingival plaque
BJ Paster et al.
JOURNAL OF BACTERIOLOGY (2001)
Frequency and distribution of endodontically treated teeth and apical periodontitis in an urban Danish population
LL Kirkevang et al.
INTERNATIONAL ENDODONTIC JOURNAL (2001)
分享论文
