4.8 Article

FLASH: ultra-fast protocol to identify RNA-protein interactions in cells

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

Advances in CLIP Technologies for Studies of Protein-RNA Interactions

Flora C. Y. Lee et al.

MOLECULAR CELL (2018)

Review Cell Biology

A brave new world of RNA-binding proteins

Matthias W. Hentze et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)

Article Biochemistry & Molecular Biology

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

Enis Afgan et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins

Daniel Maticzka et al.

NATURE COMMUNICATIONS (2018)

Review Cell Biology

RNA modifications and structures cooperate to guide RNA-protein interactions

Cole J. T. Lewis et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

RCAS: an RNA centric annotation system for transcriptome-wide regions of interest

Bora Uyar et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biotechnology & Applied Microbiology

PureCLIP: capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data

Sabrina Krakau et al.

GENOME BIOLOGY (2017)

Article Cell Biology

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export

Michaela Mueller-McNicoll et al.

GENES & DEVELOPMENT (2016)

Article Biochemical Research Methods

irCLIP platform for efficient characterization of protein-RNA interactions

Brian J. Zarnegar et al.

NATURE METHODS (2016)

Article Biochemical Research Methods

Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)

Eric L. Van Nostrand et al.

NATURE METHODS (2016)

Article Biochemistry & Molecular Biology

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Cell Biology

Emerging functions of the Quaking RNA-binding proteins and link to human diseases

Lama Darbelli et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Review Cell Biology

The RNAissance family: SR proteins as multifaceted regulators of gene expression

Jonathan M. Howard et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)

Article Biotechnology & Applied Microbiology

GraphProt: modeling binding preferences of RNA-binding proteins

Daniel Maticzka et al.

GENOME BIOLOGY (2014)

Article Neurosciences

CLIPing the brain: Studies of protein-RNA interactions important for neurodegenerative disorders

Miha Modic et al.

MOLECULAR AND CELLULAR NEUROSCIENCE (2013)

Article Biochemistry & Molecular Biology

Tandem Stem-Loops in roX RNAs Act Together to Mediate X Chromosome Dosage Compensation in Drosophila

Ibrahim Avsar Ilik et al.

MOLECULAR CELL (2013)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biotechnology & Applied Microbiology

Addressing challenges in the production and analysis of illumina sequencing data

Martin Kircher et al.

BMC GENOMICS (2011)

Article Multidisciplinary Sciences

Frequent pathway mutations of splicing machinery in myelodysplasia

Kenichi Yoshida et al.

NATURE (2011)

Review Biotechnology & Applied Microbiology

The SR protein family

Peter J. Shepard et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Improvement of reverse transcription PCR by RNase h

M Kitabayashi et al.

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2003)