相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The SOS2-SCaBP8 Complex Generates and Fine-Tunes an AtANN4-Dependent Calcium Signature under Salt Stress
Liang Ma et al.
DEVELOPMENTAL CELL (2019)
Plant cell-surface GIPC sphingolipids sense salt to trigger Ca2+ influx
Zhonghao Jiang et al.
NATURE (2019)
Fine-tuning of RBOHF activity is achieved by differential phosphorylation and Ca2+ binding
Jian-Pu Han et al.
NEW PHYTOLOGIST (2019)
An Overlooked Paleotetraploidization in Cucurbitaceae
Jinpeng Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Unraveling salt stress signaling in plants
Yongqing Yang et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2018)
Advances and current challenges in calcium signaling
Joerg Kudla et al.
NEW PHYTOLOGIST (2018)
Integrating Networks, Phylogenomics, and Population Genomics for the Study of Polyploidy
Paul D. Blischak et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 49 (2018)
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
Helene Badouin et al.
NATURE (2017)
The evolutionary significance of polyploidy
Yves Van de Peer et al.
NATURE REVIEWS GENETICS (2017)
Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity
Setareh Tasdighian et al.
PLANT CELL (2017)
Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation
Tao Zhao et al.
PLANT CELL (2017)
Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard
Celine Geiser et al.
PLANT CELL (2016)
Extracting functional trends from whole genome duplication events using comparative genomics
Russell A. Hermansen et al.
BIOLOGICAL PROCEDURES ONLINE (2016)
Abiotic Stress Signaling and Responses in Plants
Jian-Kang Zhu
CELL (2016)
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
Luis M. Corrochano et al.
CURRENT BIOLOGY (2016)
Expression-level support for gene dosage seas tivity in three Glycine subgenus Glycine polyploids and their diploid progenitors
Jeremy E. Coate et al.
NEW PHYTOLOGIST (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms
Zhen Li et al.
PLANT CELL (2016)
Kinetics genetics: Incorporating the concept of genomic balance into an understanding of quantitative traits
James A. Birchler et al.
PLANT SCIENCE (2016)
A calcium sensor - protein kinase signaling module diversified in plants and is retained in all lineages of Bikonta species
Linda Beckmann et al.
SCIENTIFIC REPORTS (2016)
Mechanisms and Physiological Roles of the CBL-CIPK Networking System in Arabidopsis thaliana
Jingjing Mao et al.
GENES (2016)
Genome-wide identification of Calcineurin B-Like (CBL) gene family of plants reveals novel conserved motifs and evolutionary aspects in calcium signaling events
Tapan Kumar Mohanta et al.
BMC PLANT BIOLOGY (2015)
Increasing complexity and versatility: How the calcium signaling toolkit was shaped during plant land colonization
Kai H. Edel et al.
CELL CALCIUM (2015)
Tonoplast CBL-CIPK calcium signaling network regulates magnesium homeostasis in Arabidopsis
Ren-Jie Tang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Nonadditive Gene Expression in Polyploids
Mi-Jeong Yoo et al.
ANNUAL REVIEW OF GENETICS, VOL 48 (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Signaling in cells and organisms - calcium holds the line
Leonie Steinhorst et al.
CURRENT OPINION IN PLANT BIOLOGY (2014)
Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time
Gavin C. Conant et al.
CURRENT OPINION IN PLANT BIOLOGY (2014)
Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots
Yuannian Jiao et al.
PLANT CELL (2014)
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
Shengyi Liu et al.
NATURE COMMUNICATIONS (2014)
Comparative phylogenomics of the CBL-CIPK calcium-decoding network in the moss Physcomitrella, Arabidopsis, and other green lineages
Thomas J. Kleist et al.
FRONTIERS IN PLANT SCIENCE (2014)
Overlapping Community Detection in Networks: The State-of-the-Art and Comparative Study
Jierui Xie et al.
ACM COMPUTING SURVEYS (2013)
Structural Biology of a Major Signaling Network that Regulates Plant Abiotic Stress: The CBL-CIPK Mediated Pathway
Maria Jose Sanchez-Barrena et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)
Phosphorylation of Calcineurin B-like (CBL) Calcium Sensor Proteins by Their CBL-interacting Protein Kinases (CIPKs) Is Required for Full Activity of CBL-CIPK Complexes toward Their Target Proteins
Kenji Hashimoto et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
Angelique D'Hont et al.
NATURE (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines
James A. Birchler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A genome triplication associated with early diversification of the core eudicots
Yuannian Jiao et al.
GENOME BIOLOGY (2012)
Ancestral polyploidy in seed plants and angiosperms
Yuannian Jiao et al.
NATURE (2011)
Phosphorylation of SOS3-Like Calcium-Binding Proteins by Their Interacting SOS2-Like Protein Kinases Is a Common Regulatory Mechanism in Arabidopsis
Wenming Du et al.
PLANT PHYSIOLOGY (2011)
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
James C. Schnable et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Community detection in graphs
Santo Fortunato
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2010)
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
Haibao Tang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Ohnologs in the human genome are dosage balanced and frequently associated with disease
Takashi Makino et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
Michael Freeling
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
Plant calcineurin B-like proteins and their interacting protein kinases
Oliver Batistic et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2009)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates
Karin S. Kassahn et al.
GENOME RESEARCH (2009)
The CBL-CIPK Ca2+-decoding signaling network: function and perspectives
Stefan Weinl et al.
NEW PHYTOLOGIST (2009)
The preferential retention of starch synthesis genes reveals the impact of whole-genome duplication on grass evolution
Yufeng Wu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Emergence of a novel calcium signaling pathway in plants: CBL-CIPK signaling network
Girdhar K. Pandey
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2008)
The calcium sensor CBL10 mediates salt tolerance by regulating ion homeostasis in Arabidopsis
Beom-Gi Kim et al.
PLANT JOURNAL (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
Joachim Kilian et al.
PLANT JOURNAL (2007)
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
Brian C. Thomas et al.
GENOME RESEARCH (2006)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
Michael Freeling et al.
GENOME RESEARCH (2006)
Two rounds of whole genome duplication in the ancestral vertebrate
P Dehal et al.
PLOS BIOLOGY (2005)
Uncovering the overlapping community structure of complex networks in nature and society
G Palla et al.
NATURE (2005)
Clique percolation in random networks -: art. no. 160202
I Derényi et al.
PHYSICAL REVIEW LETTERS (2005)
Modeling gene and genome duplications in eukaryotes
S Maere et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Dosage balance in gene regulation: biological implications
JA Birchler et al.
TRENDS IN GENETICS (2005)
Is genome size influenced by colonization of new environments in dipteran species?
C Nardon et al.
MOLECULAR ECOLOGY (2005)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
G Blanc et al.
PLANT CELL (2004)
Glacial history and colonization of Europe by the blue tit Parus caeruleus
L Kvist et al.
JOURNAL OF AVIAN BIOLOGY (2004)
Calcium sensors and their interacting protein kinases: Genomics of the Arabidopsis and rice CBL-CIPK signaling networks
U Kolukisaoglu et al.
PLANT PHYSIOLOGY (2004)
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
O Jaillon et al.
NATURE (2004)
Regulatory evolution across the protein interaction network
B Lemos et al.
NATURE GENETICS (2004)
Dosage sensitivity and the evolution of gene families in yeast
B Papp et al.
NATURE (2003)
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
JE Bowers et al.
NATURE (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
The hidden duplication past of Arabidopsis thaliana
C Simillion et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Extensive genomic duplication during early chordate evolution
A McLysaght et al.
NATURE GENETICS (2002)
The NAF domain defines a novel protein-protein interaction module conserved in Ca2+-regulated kinases
V Albrecht et al.
EMBO JOURNAL (2001)