相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Protein-peptide docking: opportunities and challenges
Maciej Ciemny et al.
DRUG DISCOVERY TODAY (2018)
Hierarchical Flexible Peptide Docking by Conformer Generation and Ensemble Docking of Peptides
Pei Zhou et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2018)
HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm
Pei Zhou et al.
NUCLEIC ACIDS RESEARCH (2018)
MDockPeP: An ab-initio protein-peptide docking server
Xianjin Xu et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2018)
High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
Nawsad Alam et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT
Kathryn A. Porter et al.
BIOINFORMATICS (2017)
LEADS-PEP: A Benchmark Data Set for Assessment of Peptide Docking Performance
Alexander Sebastian Hauser et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2016)
Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction
Chengfei Yan et al.
STRUCTURE (2016)
Peptide therapeutics: current status and future directions
Keld Fosgerau et al.
DRUG DISCOVERY TODAY (2015)
Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2
Thom Vreven et al.
JOURNAL OF MOLECULAR BIOLOGY (2015)
GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimization
Hasup Lee et al.
NUCLEIC ACIDS RESEARCH (2015)
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
Mateusz Kurcinski et al.
NUCLEIC ACIDS RESEARCH (2015)
Fully Blind Peptide-Protein Docking with pepATTRACT
Christina E. M. Schindler et al.
STRUCTURE (2015)
AnchorDock: Blind and Flexible Anchor-Driven Peptide Docking
Avraham Ben-Shimon et al.
STRUCTURE (2015)
Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation
Kim Van Roey et al.
CHEMICAL REVIEWS (2014)
The Future of Peptide-based Drugs
David J. Craik et al.
CHEMICAL BIOLOGY & DRUG DESIGN (2013)
Druggable protein-protein interactions - from hot spots to hot segments
Nir London et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2013)
Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how
Nir London et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2013)
A nonredundant structure dataset for benchmarking protein-RNA computational docking
Sheng-You Huang et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2013)
A Unified Conformational Selection and Induced Fit Approach to Protein-Peptide Docking
Mikael Trellet et al.
PLOS ONE (2013)
Protein-Peptide Complex Prediction through Fragment Interaction Patterns
Erik Verschueren et al.
STRUCTURE (2013)
PepBind: A Comprehensive Database and Computational Tool for Analysis of Protein–peptide Interactions
Arindam Atanu Das et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2013)
Rosetta FlexPepDockab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors
Barak Raveh et al.
PLOS ONE (2011)
PepX: a structural database of non-redundant protein-peptide complexes
Peter Vanhee et al.
NUCLEIC ACIDS RESEARCH (2010)
DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility
Iris Antes
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
The Structural Basis of Peptide-Protein Binding Strategies
Nir London et al.
STRUCTURE (2010)
Peptide-mediated interactions in biological systems: new discoveries and applications
Evangelia Petsalaki et al.
CURRENT OPINION IN BIOTECHNOLOGY (2008)
Reaching for high-hanging fruit in drug discovery at protein-protein interfaces
James A. Wells et al.
NATURE (2007)
A flexible docking procedure for the exploration of peptide binding selectivity to known structures and homology models of PDZ domains
MY Niv et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
