相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。SignalP 5.0 improves signal peptide predictions using deep neural networks
Jose Juan Almagro Armenteros et al.
NATURE BIOTECHNOLOGY (2019)
Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment
Kohei Ino et al.
ISME JOURNAL (2018)
Gene expression and ultrastructure of meso- and thermophilic methanotrophic consortia
Viola Krukenberg et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction
Chen Cai et al.
ISME JOURNAL (2018)
GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes
Joel A. Boyd et al.
NUCLEIC ACIDS RESEARCH (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
Ubiquitous and significant anaerobic oxidation of methane in freshwater lake sediments
Karla Martinez-Cruz et al.
WATER RESEARCH (2018)
Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments
Alex W. Hernsdorf et al.
ISME JOURNAL (2017)
High-Quality Draft Genome Sequence of Candidatus Methanoperedens sp. Strain BLZ2, a Nitrate-Reducing Anaerobic Methane-Oxidizing Archaeon Enriched in an Anoxic Bioreactor
Stefanie Berger et al.
GENOME ANNOUNCEMENTS (2017)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Archaea catalyze iron-dependent anaerobic oxidation of methane
Katharina F. Ettwig et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction
Silvan Scheller et al.
SCIENCE (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria
Gunter Wegener et al.
NATURE (2015)
Single cell activity reveals direct electron transfer in methanotrophic consortia
Shawn E. McGlynn et al.
NATURE (2015)
High rates of anaerobic methane oxidation in freshwater wetlands reduce potential atmospheric methane emissions
K. E. A. Segarra et al.
NATURE COMMUNICATIONS (2015)
A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea
Arslan Arshad et al.
FRONTIERS IN MICROBIOLOGY (2015)
The Geoglobus acetivorans Genome: Fe(III) Reduction, Acetate Utilization, Autotrophic Growth, and Degradation of Aromatic Compounds in a Hyperthermophilic Archaeon
Andrey V. Mardanov et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
An inorganic geochemical argument for coupled anaerobic oxidation of methane and iron reduction in marine sediments
N. Riedinger et al.
GEOBIOLOGY (2014)
Methane and nitrous oxide sources and emissions in a subtropical freshwater reservoir, South East Queensland, Australia
K. Sturm et al.
BIOGEOSCIENCES (2014)
Impact of electron acceptor availability on the anaerobic oxidation of methane in coastal freshwater and brackish wetland sediments
Katherine E. A. Segarra et al.
GEOCHIMICA ET COSMOCHIMICA ACTA (2013)
A simple method to synthesize birnessite at ambient pressure and temperature
Matthias Haendel et al.
GEODERMA (2013)
Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage
Mohamed F. Haroon et al.
NATURE (2013)
TIGRFAMs and Genome Properties in 2013
Daniel H. Haft et al.
NUCLEIC ACIDS RESEARCH (2013)
Sorption behavior of heavy metals on birnessite: Relationship with its Mn average oxidation state and implications for types of sorption sites
Yan Wang et al.
CHEMICAL GEOLOGY (2012)
Anaerobic methane oxidation in metalliferous hydrothermal sediments: influence on carbon flux and decoupling from sulfate reduction
Scott D. Wankel et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald et al.
ISME JOURNAL (2012)
Geochemical evidence for iron-mediated anaerobic oxidation of methane
Orit Sivan et al.
LIMNOLOGY AND OCEANOGRAPHY (2011)
Complete genome sequence of Ferroglobus placidus AEDII12DO
Iain Anderson et al.
STANDARDS IN GENOMIC SCIENCES (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
Nancy Y. Yu et al.
BIOINFORMATICS (2010)
Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes
Jessica E. Butler et al.
BMC GENOMICS (2010)
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria
Katharina F. Ettwig et al.
NATURE (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Anaerobic Oxidation of Methane: Progress with an Unknown Process
Katrin Knittel et al.
ANNUAL REVIEW OF MICROBIOLOGY (2009)
Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum
Katharina F. Ettwig et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Manganese- and Iron-Dependent Marine Methane Oxidation
Emily J. Beal et al.
SCIENCE (2009)
Enrichment of denitrifying anaerobic methane oxidizing microorganisms
Shihu Hu et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2009)
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
Konstantinos T. Konstantinidis et al.
CURRENT OPINION IN MICROBIOLOGY (2007)
UniRef: comprehensive and non-redundant UniProt reference clusters
Baris E. Suzek et al.
BIOINFORMATICS (2007)
Oceanic methane biogeochemistry
William S. Reeburgh
CHEMICAL REVIEWS (2007)
Development of a sequential extraction procedure for iron: implications for iron partitioning in continentally derived particulates
SW Poulton et al.
CHEMICAL GEOLOGY (2005)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
CD-Search: protein domain annotations on the fly
A Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2004)
The Pfam protein families database
A Bateman et al.
NUCLEIC ACIDS RESEARCH (2004)
The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
Solid phase associations, oceanic fluxes and the anthropogenic perturbation of transition metals in world river particulates
SW Poulton et al.
MARINE CHEMISTRY (2000)
分享论文
