相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Contemporary IncI1 plasmids involved in the transmission and spread of antimicrobial resistance in Enterobacteriaceae
Alessandra Carattoli et al.
PLASMID (2021)
Limited Exchange of Salmonella Among Domestic Pigs and Wild Boars in Italy
Silvia Bonardi et al.
ECOHEALTH (2019)
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
GenBank
Eric W. Sayers et al.
NUCLEIC ACIDS RESEARCH (2019)
UniProt: a worldwide hub of protein knowledge
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2019)
Modification of the existing maximum residue levels for fluopyram in herbal infusions from leaves, herbs and flowers
Maria Anastassiadou et al.
EFSA JOURNAL (2019)
Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae
M. Rozwandowicz et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2018)
Occurrence of enteropathogenic bacteria in birds of prey in Italy
A. Gargiulo et al.
LETTERS IN APPLIED MICROBIOLOGY (2018)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Salmonella serovar distribution from non-human sources in Italy; results from the IT-Enter-Vet network
Marzia Mancin et al.
VETERINARY RECORD (2018)
A genomic overview of the population structure of Salmonella
Nabil-Fareed Alikhan et al.
PLOS GENETICS (2018)
High-resolution diffusion pattern of human infections by Salmonella enterica serovar Napoli in Northern Italy explained through phylogeography
Maria Gori et al.
PLOS ONE (2018)
Emergence of CTX-M-1-producing Salmonella enterica serovar Napoli: A novel 'enzyme-pathogen association' in the Italian extended-spectrum beta-lactamase (ESBL) endemic context
Luigi Principe et al.
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2018)
Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns o Horizontally Acquired Genetic Elements
Jay Worley et al.
MBIO (2018)
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
Yasuhiro Tanizawa et al.
BIOINFORMATICS (2018)
chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
Mickael Silva et al.
MICROBIAL GENOMICS (2018)
Whole-Genome Sequence of the First Extended-Spectrum beta-Lactamase-Producing Strain of Salmonella enterica subsp. enterica Serovar Napoli
Mathieu Clement et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)
Molecular and Epidemiologic Analysis of Reemergent Salmonella enterica Serovar Napoli, Italy, 2011-2015
Michela Sabbatucci et al.
EMERGING INFECTIOUS DISEASES (2018)
Salmonella enterica Serotype Napoli is the First Cause of Invasive Nontyphoidal Salmonellosis in Lombardy, Italy (2010-2014), and Belongs to Typhi Subclade
Pol Huedo et al.
FOODBORNE PATHOGENS AND DISEASE (2017)
First detection of Salmonella enterica serovar Napoli in kennel dogs in Italy
G. Dotto et al.
VETERINARY RECORD (2017)
Inducible Prophage Mutant of Escherichia coli Can Lyse New Host and the Key Sites of Receptor Recognition Identification
Mianmian Chen et al.
FRONTIERS IN MICROBIOLOGY (2017)
Differential roles for pathogenicity islands SPI-13 and SPI-8 in the interaction of Salmonella Enteritidis and Salmonella Typhi with murine and human macrophages
Rodrigo A. Espinoza et al.
BIOLOGICAL RESEARCH (2017)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
A Multischool Outbreak Due to Salmonella enterica serovar Napoli Associated with Elevated Rates of Hospitalizations and Bacteremia, Milan, Italy, 2014
Pol Huedo et al.
FOODBORNE PATHOGENS AND DISEASE (2016)
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
Imchang Lee et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
PHASTER: a better, faster version of the PHAST phage search tool
David Arndt et al.
NUCLEIC ACIDS RESEARCH (2016)
MOST : a modified MLST typing tool based on short read sequencing
Rediat Tewolde et al.
PEERJ (2016)
The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies
Catherine E. Yoshida et al.
PLOS ONE (2016)
kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome
Shea N. Gardner et al.
BIOINFORMATICS (2015)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Salmonella Serotype Determination Utilizing High-Throughput Genome Sequencing Data
Shaokang Zhang et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Salmonella enterica Serovar Napoli Infection in Italy from 2000 to 2013: Spatial and Spatio-Temporal Analysis of Cases Distribution and the Effect of Human and Animal Density on the Risk of Infection
Caterina Graziani et al.
PLOS ONE (2015)
Patterns of genome evolution that have accompanied host adaptation in Salmonella
Gemma C. Langridge et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Ward's Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward's Criterion?
Fionn Murtagh et al.
JOURNAL OF CLASSIFICATION (2014)
BacMet: antibacterial biocide and metal resistance genes database
Chandan Pal et al.
NUCLEIC ACIDS RESEARCH (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Prevalence and antimicrobial susceptibility of Salmonella in European wild boar (Sus scrofa); Latium Region - Italy
T. Zottola et al.
COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES (2013)
Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp enterica Inferred from Genome-Wide Reference-Free SNP Characters
Ruth E. Timme et al.
GENOME BIOLOGY AND EVOLUTION (2013)
Diverse Functions of Restriction-Modification Systems in Addition to Cellular Defense
Kommireddy Vasu et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2013)
An overview of STRUCTURE: applications, parameter settings, and supporting software
Liliana Porras-Hurtado et al.
Frontiers in Genetics (2013)
Identification of acquired antimicrobial resistance genes
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica
Henk C. den Bakker et al.
BMC GENOMICS (2011)
Virulotyping of Salmonella enterica Serovar Napoli Strains Isolated in Italy from Human and Nonhuman Sources
Caterina Graziani et al.
FOODBORNE PATHOGENS AND DISEASE (2011)
Plasmids in Gram negatives: Molecular typing of resistance plasmids
Alessandra Carattoli
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2011)
Recombination and Population Structure in Salmonella enterica
Xavier Didelot et al.
PLOS GENETICS (2011)
Evolution and Population Structure of Salmonella enterica Serovar Newport
Vartul Sangal et al.
JOURNAL OF BACTERIOLOGY (2010)
Genome-wide identification of novel genomic islands that contribute to Salmonella virulence in mouse systemic infection
Takeshi Haneda et al.
FEMS MICROBIOLOGY LETTERS (2009)
Human Infections Due to Salmonella Napoli: A Multicountry, Emerging Enigma Recognized by the Enter-net International Surveillance Network
Ian S. T. Fisher et al.
FOODBORNE PATHOGENS AND DISEASE (2009)
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Morgan N. Price et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
A novel PhoP-regulated locus encoding the cytolysin ClyA and the secreted invasin TaiA of Salmonella enterica serovar Typhi is involved in virulence
Sebastien P. Faucher et al.
MICROBIOLOGY-SGM (2009)
Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways
Nicholas R. Thomson et al.
GENOME RESEARCH (2008)
Distribution of Salmonella pathogenicity island (SPI)-8 and SPI-10 among different serotypes of Salmonella
Sunil D. Saroj et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2008)
The Salmonella Typhi hlyE gene plays a role in invasion of cultured epithelial cells and its functional transfer to S. Typhimurium promotes deep organ infection in mice
Juan A. Fuentes et al.
RESEARCH IN MICROBIOLOGY (2008)
Comparative analysis of IncHI2 plasmids carrying blaCTX-M-2 or blaCTX-M-9 from Escherichia coli and salmonella enterica strains isolated from poultry and humans
Aurora Garcia Fernandez et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2007)
Complete nucleotide sequences of 84.5-and 3.2-kb plasmids in the multi-antibiotic resistant Salmonella enterica serovar Typhimurium U302 strain G8430
Chin-Yi Chen et al.
PLASMID (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Identification of Salmonella gallinarum virulence genes in a chicken infection model using PCR-based signature-tagged mutagenesis
DH Shah et al.
MICROBIOLOGY-SGM (2005)
Effects of the Escherichia coli toxin cytolysin A on mucosal immunostimulation via epithelial Ca2+ signalling and Toll-like receptor 4
T Söderblom et al.
CELLULAR MICROBIOLOGY (2005)
CD-Search: protein domain annotations on the fly
A Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2004)
The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics
MW Gilmour et al.
PLASMID (2004)
Characterization of a pore-forming cytotoxin expressed by Salmonella enterica serovars Typhi and Paratyphi A
J Oscarsson et al.
INFECTION AND IMMUNITY (2002)
A pilot with pain in his leg:: Thigh abscess caused by Salmonella enterica serotype Brandenburg
P Björkman et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2002)
Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella
N Figueroa-Bossi et al.
MOLECULAR MICROBIOLOGY (2001)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)