Transcriptomic and physiological analysis of common duckweed Lemna minor responses to NH4+ toxicity

Background: Plants can suffer ammonium (NH4+) toxicity, particularly when NH4+ is supplied as the sole nitrogen source. However, our knowledge about the underlying mechanisms of NH4+ toxicity is still largely unknown. Lemna minor, a model duckweed species, can grow well in high NH4+ environment but to some extent can also suffer toxic effects. The transcriptomic and physiological analysis of L. minor responding to high NH4+ may provide us some interesting and useful information not only in toxic processes, but also in tolerance mechanisms. Results: The L. minor cultured in the Hoagland solution were used as the control (NC), and in two NH4+ concentrations (NH4+ was the sole nitrogen source), 84 mg/L (A84) and 840 mg/L (A840) were used as stress treatments. The NH4+ toxicity could inhibit the growth of L. minor. Reactive oxygen species (ROS) and cell death were studied using stained fronds under toxic levels of NH4+. The malondialdehyde content and the activities of superoxide dismutase and peroxidase increased from NC to A840, rather than catalase and ascorbate peroxidase. A total of 6.62G nucleotides were generated from the three distinct libraries. A total of 14,207 differentially expressed genes (DEGs) among 70,728 unigenes were obtained. All the DEGs could be clustered into 7 profiles. Most DEGs were down-regulated under NH4+ toxicity. The genes required for lignin biosynthesis in phenylpropanoid biosynthesis pathway were up-regulated. ROS oxidative-related genes and programmed cell death (PCD)-related genes were also analyzed and indicated oxidative damage and PCD occurring under NH4+ toxicity. Conclusions: The first large transcriptome study in L. minor responses to NH4+ toxicity was reported in this work. NH4+ toxicity could induce ROS accumulation that causes oxidative damage and thus induce cell death in L. minor. The antioxidant enzyme system was activated under NH4+ toxicity for ROS scavenging. The phenylpropanoid pathway was stimulated under NH4+ toxicity. The increased lignin biosynthesis might play an important role in NH4+ toxicity resistance.