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Peng Deng et al.
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AMAS: a fast tool for alignment manipulation and computing of summary statistics
Marek L. Borowiec
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Yucheng Zhang et al.
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Donovan H. Parks et al.
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Yang Liu et al.
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Ruth R. Miller et al.
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Peter Vandamme et al.
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Jan P. Meier-Kolthoff et al.
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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Development of phylogenetic markers from single-copy nuclear genes for multi locus, species level analyses in the mint family (Lamiaceae)
Manuel Antonio Curto et al.
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Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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Markus Goeker et al.
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Variation of the antimicrobial susceptibility profiles of Burkholderia cepacia complex clonal isolates obtained from chronically infected cystic fibrosis patients: a five-year survey in the major Portuguese treatment center
J. H. Leitao et al.
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E. Mahenthiralingam et al.
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Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies
G. Aguileta et al.
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DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
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Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli et al.
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Update on the Burkholderia cepacia complex
JJ LiPuma
CURRENT OPINION IN PULMONARY MEDICINE (2005)
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A Baldwin et al.
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E Mahenthiralingam et al.
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
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mlstdbNet - distributed multi-locus sequence typing (MLST) databases
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S Kurtz et al.
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From gene trees to organismal phylogeny in prokaryotes:: The case of the γ-proteobacteria
E Lerat et al.
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T Coenye et al.
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Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients
T Coenye et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)
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