相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Guangchuang Yu et al.
BIOINFORMATICS (2015)
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape
Aurelien Griffon et al.
NUCLEIC ACIDS RESEARCH (2015)
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data
Huihuang Yan et al.
BMC BIOINFORMATICS (2014)
CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse
Qixuan Wang et al.
NUCLEIC ACIDS RESEARCH (2014)
Large-Scale Quality Analysis of Published ChIP-seq Data
Georgi K. Marinov et al.
G3-GENES GENOMES GENETICS (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
FoxA1 Specifies Unique Androgen and Glucocorticoid Receptor Binding Events in Prostate Cancer Cells
Biswajyoti Sahu et al.
CANCER RESEARCH (2013)
Predicting the molecular complexity of sequencing libraries
Timothy Daley et al.
NATURE METHODS (2013)
Target analysis by integration of transcriptome and ChIP-seq data with BETA
Su Wang et al.
NATURE PROTOCOLS (2013)
A quality control system for profiles obtained by ChIP sequencing
Marco-Antonio Mendoza-Parra et al.
NUCLEIC ACIDS RESEARCH (2013)
The mutational landscape of chromatin regulatory factors across 4,623 tumor samples
Abel Gonzalez-Perez et al.
GENOME BIOLOGY (2013)
htSeqTools: high-throughput sequencing quality control, processing and visualization in R
Evarist Planet et al.
BIOINFORMATICS (2012)
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
Bo Qin et al.
BIOINFORMATICS (2012)
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt et al.
GENOME RESEARCH (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
Systematic evaluation of factors influencing ChIP-seq fidelity
Yiwen Chen et al.
NATURE METHODS (2012)
HIstome-a relational knowledgebase of human histone proteins and histone modifying enzymes
Satyajeet P. Khare et al.
NUCLEIC ACIDS RESEARCH (2012)
CHANCE: comprehensive software for quality control and validation of ChIP-seq data
Aaron Diaz et al.
GENOME BIOLOGY (2012)
Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
Iros Barozzi et al.
BIOLOGY DIRECT (2011)
An integrated ChIP-seq analysis platform with customizable workflows
Eugenia G. Giannopoulou et al.
BMC BIOINFORMATICS (2011)
Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer
Biswajyoti Sahu et al.
EMBO JOURNAL (2011)
The Distal VH Gene Cluster of the Igh Locus Contains Distinct Regulatory Elements with Pax5 Transcription Factor-Dependent Activity in Pro-B Cells
Anja Ebert et al.
IMMUNITY (2011)
Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes
Erik Engelen et al.
NATURE GENETICS (2011)
seqMINER: an integrated ChIP-seq data interpretation platform
Tao Ye et al.
NUCLEIC ACIDS RESEARCH (2011)
Cistrome: an integrative platform for transcriptional regulation studies
Tao Liu et al.
GENOME BIOLOGY (2011)
BigWig and BigBed: enabling browsing of large distributed datasets
W. J. Kent et al.
BIOINFORMATICS (2010)
The In Vivo Pattern of Binding of RAG1 and RAG2 to Antigen Receptor Loci
Yanhong Ji et al.
CELL (2010)
Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions
Aaron D. Goldberg et al.
CELL (2010)
Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers
Michiel Vermeulen et al.
CELL (2010)
Genome-wide Profiling of Interleukin-4 and STAT6 Transcription Factor Regulation of Human Th2 Cell Programming
Laura L. Elo et al.
IMMUNITY (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data
Kimberly R. Blahnik et al.
NUCLEIC ACIDS RESEARCH (2010)
Distinct histone modifications in stem cell lines and tissue lineages from the early mouse embryo
Peter J. Rugg-Gunn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
Suresh Cuddapah et al.
GENOME RESEARCH (2009)
A census of human transcription factors: function, expression and evolution
Juan M. Vaquerizas et al.
NATURE REVIEWS GENETICS (2009)
TFCat: the curated catalog of mouse and human transcription factors
Debra L. Fulton et al.
GENOME BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity
Thomas G. Fazzio et al.
CELL (2008)
An integrated software system for analyzing ChIP-chip and ChIP-seq data
Hongkai Ji et al.
NATURE BIOTECHNOLOGY (2008)
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
A Siepel et al.
GENOME RESEARCH (2005)
分享论文
