4.8 Article

PmiREN: a comprehensive encyclopedia of plant miRNAs

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants

Zheng Kuang et al.

BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

miRBase: from microRNA sequences to function

Ana Kozomara et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

psRNATarget: a plant small RNA target analysis server (2017 release)

Xinbin Dai et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data

Michael J. Axtell et al.

PLANT CELL (2018)

Article Plant Sciences

MicroRNA and Transcription Factor: Key Players in Plant Regulatory Network

Abdul F. A. Samad et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Biochemical Research Methods

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

Claudia Paicu et al.

BIOINFORMATICS (2017)

Review Plant Sciences

The evolution of microRNAs in plants

Jie Cui et al.

CURRENT OPINION IN PLANT BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Assembly: a resource for assembled genomes at NCBI

Paul A. Kitts et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Plant Sciences

Functional and evolutionary analyses of the miR156 and miR529 families in land plants

Edna Gicela Ortiz Morea et al.

BMC PLANT BIOLOGY (2016)

Article Biochemistry & Molecular Biology

PNRD: a plant non-coding RNA database

Xin Yi et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Plant Sciences

Evolutionary history of plant microRNAs

Richard S. Taylor et al.

TRENDS IN PLANT SCIENCE (2014)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Biochemistry & Molecular Biology

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

Kestrel Rogers et al.

PLANT CELL (2013)

Article Biochemistry & Molecular Biology

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

Basel Khraiwesh et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2012)

Article Biochemistry & Molecular Biology

Phytozome: a comparative platform for green plant genomics

David M. Goodstein et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

The sequence read archive: explosive growth of sequencing data

Yuichi Kodama et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Plant Sciences

Functions of microRNAs in plant stress responses

Ramanjulu Sunkar et al.

TRENDS IN PLANT SCIENCE (2012)

Article Biochemical Research Methods

miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants

Xiaozeng Yang et al.

BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data

Xiaozeng Yang et al.

GENOMICS (2011)

Article Biochemistry & Molecular Biology

PmiRKB: a plant microRNA knowledge base

Yijun Meng et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Biotechnology & Applied Microbiology

Vive la difference: biogenesis and evolution of microRNAs in plants and animals

Michael J. Axtell et al.

GENOME BIOLOGY (2011)

Article Biochemistry & Molecular Biology

PMRD: plant microRNA database

Zhenhai Zhang et al.

NUCLEIC ACIDS RESEARCH (2010)

Review Cell Biology

MicroRNAs with macro-effects on plant stress responses

Ramanjulu Sunkar

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2010)

Article Biochemical Research Methods

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

Charles Addo-Quaye et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

Origin, Biogenesis, and Activity of Plant MicroRNAs

Olivier Voinnet

Review Biochemistry & Molecular Biology

MicroRNAs: Target Recognition and Regulatory Functions

David P. Bartel

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana

Leonardo Alves-Junior et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biotechnology & Applied Microbiology

Discovering microRNAs from deep sequencing data using miRDeep

Marc R. Friedlaender et al.

NATURE BIOTECHNOLOGY (2008)

Article Biochemistry & Molecular Biology

Criteria for Annotation of Plant MicroRNAs

Blake C. Meyers et al.

PLANT CELL (2008)

Review Plant Sciences

Small RNAs as big players in plant abiotic stress responses and nutrient deprivation

Ramanjulu Sunkar et al.

TRENDS IN PLANT SCIENCE (2007)

Article Biochemistry & Molecular Biology

RNAhybrid:: microRNA target prediction easy, fast and flexible

Jan Krueger et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Biochemistry & Molecular Biology

MicroRNAs: Genomics, biogenesis, mechanism, and function

DP Bartel

Article Multidisciplinary Sciences

The functions of animal microRNAs

V Ambros

NATURE (2004)

Article Biochemistry & Molecular Biology

Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis

R Sunkar et al.

PLANT CELL (2004)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

Endogenous and silencing-associated small RNAs in plants

C Llave et al.

PLANT CELL (2002)