4.8 Article

PADS Arsenal: a database of prokaryotic defense systems related genes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Database Resources of the BIG Data Center in 2019

Zhang Zhang et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

Database resources of the National Center for Biotechnology Information

Eric W. Sayers et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

The Pfam protein families database in 2019

Sara El-Gebali et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Microbiology

Prokaryotic Argonaute proteins: novel genome-editing tools?

Jorrit W. Hegge et al.

NATURE REVIEWS MICROBIOLOGY (2018)

Article Biochemistry & Molecular Biology

TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci

Yingzhou Xie et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Systematic discovery of antiphage defense systems in the microbial pangenome

Shany Doron et al.

SCIENCE (2018)

Article Evolutionary Biology

Reconstruction of the evolution of microbial defense systems

Pere Puigbo et al.

BMC EVOLUTIONARY BIOLOGY (2017)

Article Biochemical Research Methods

Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements

Quan Zhang et al.

BMC BIOINFORMATICS (2017)

Article Biochemical Research Methods

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

Zuguang Gu et al.

BIOINFORMATICS (2016)

Review Biochemistry & Molecular Biology

Toxin-antitoxin systems in bacterial growth arrest and persistence

Rebecca Page et al.

NATURE CHEMICAL BIOLOGY (2016)

Article Multidisciplinary Sciences

A bacterial Argonaute with noncanonical guide RNA specificity

Emine Kaya et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Biochemistry & Molecular Biology

Role of restriction-modification systems in prokaryotic evolution and ecology

A. S. Ershova et al.

BIOCHEMISTRY-MOSCOW (2015)

Article Biochemical Research Methods

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA

Daan C. Swarts et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

BREX is a novel phage resistance system widespread in microbial genomes

Tamara Goldfarb et al.

EMBO JOURNAL (2015)

Article Biochemistry & Molecular Biology

Expanded microbial genome coverage and improved protein family annotation in the COG database

Michael Y. Galperin et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

REBASE-a database for DNA restriction and modification: enzymes, genes and genomes

Richard J. Roberts et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

DNA-guided DNA interference by a prokaryotic Argonaute

Daan C. Swarts et al.

NATURE (2014)

Review Biochemistry & Molecular Biology

The evolutionary journey of Argonaute proteins

Daan C. Swarts et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)

Editorial Material Biochemistry & Molecular Biology

Prokaryotic Argonautes defend genomes against invasive DNA

Junho K. Hur et al.

TRENDS IN BIOCHEMICAL SCIENCES (2014)

Article Biotechnology & Applied Microbiology

Efficient genome editing in zebrafish using a CRISPR-Cas system

Woong Y. Hwang et al.

NATURE BIOTECHNOLOGY (2013)

Review Microbiology

Diverse Functions of Restriction-Modification Systems in Addition to Cellular Defense

Kommireddy Vasu et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2013)

Article Biochemistry & Molecular Biology

Comparative genomics of defense systems in archaea and bacteria

Kira S. Makarova et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

InterPro in 2011: new developments in the family and domain prediction database

Sarah Hunter et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Immunology

Evolution of microbes and viruses: a paradigm shift in evolutionary biology?

Eugene V. Koonin et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2012)

Review Genetics & Heredity

Toxin-Antitoxin Systems in Bacteria and Archaea

Yoshihiro Yamaguchi et al.

ANNUAL REVIEW OF GENETICS, VOL 45 (2011)

Review Biochemistry & Molecular Biology

The phage-host arms race: Shaping the evolution of microbes

Adi Stern et al.

BIOESSAYS (2011)

Article Microbiology

Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems

Kira S. Makarova et al.

JOURNAL OF BACTERIOLOGY (2011)

Review Microbiology

Evolution and classification of the CRISPR-Cas systems

Kira S. Makarova et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

DNA phosphorothioation is widespread and quantized in bacterial genomes

Lianrong Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

Josiane E. Garneau et al.

NATURE (2010)

Review Multidisciplinary Sciences

CRISPR/Cas, the Immune System of Bacteria and Archaea

Philippe Horvath et al.

SCIENCE (2010)

Review Biochemistry & Molecular Biology

CRISPR-based adaptive and heritable immunity in prokaryotes

John van der Oost et al.

TRENDS IN BIOCHEMICAL SCIENCES (2009)

Article Genetics & Heredity

The quest for orthologs: finding the corresponding gene across genomes

Arnold Kuzniar et al.

TRENDS IN GENETICS (2008)

Article Biochemistry & Molecular Biology

Phosphorothioation of DNA in bacteria by dnd genes

Lianrong Wang et al.

NATURE CHEMICAL BIOLOGY (2007)

Review Microbiology

Phage abortive infection in lactococci: variations on a theme

MC Chopin et al.

CURRENT OPINION IN MICROBIOLOGY (2005)

Review Microbiology

Prokaryotic toxin-antitoxin stress response loci

K Gerdes et al.

NATURE REVIEWS MICROBIOLOGY (2005)

Review Biochemistry & Molecular Biology

Restriction endonucleases - Classification, properties, and applications

RJ Williams

MOLECULAR BIOTECHNOLOGY (2003)

Article Food Science & Technology

Commercial bacterial starter cultures for fermented foods of the future

EB Hansen

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2002)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

TIGRFAMs: a protein family resource for the functional identification of proteins

DH Haft et al.

NUCLEIC ACIDS RESEARCH (2001)