相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Construction of Complex Features for Computational Predicting ncRNA-Protein Interaction
Qiguo Dai et al.
FRONTIERS IN GENETICS (2019)
Deep learning of the back-splicing code for circular RNA formation
Jun Wang et al.
BIOINFORMATICS (2019)
CSCD: a database for cancer-specific circular RNAs
Siyu Xia et al.
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Predicting RNA-protein binding sites and motifs through combining local and global deep convolutional neural networks
Xiaoyong Pan et al.
BIOINFORMATICS (2018)
Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks
Xiaoyong Pan et al.
BMC GENOMICS (2018)
Feature-Based and String-Based Models for Predicting RNA-Protein Interaction
Donald Adjeroh et al.
MOLECULES (2018)
RPiRLS: Quantitative Predictions of RNA Interacting with Any Protein of Known Sequence
Wen-Jun Shen et al.
MOLECULES (2018)
CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases
Chunyan Fan et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2018)
Molecular roles and function of circular RNAs in eukaryotic cells
Lesca M. Holdt et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2018)
Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes
Siyu Xia et al.
BRIEFINGS IN BIOINFORMATICS (2017)
Heterogeneous nuclear ribonucleoprotein K is associated with poor prognosis and regulates proliferation and apoptosis in bladder cancer
Xu Chen et al.
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (2017)
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
Janet Pinero et al.
NUCLEIC ACIDS RESEARCH (2017)
The emerging role and clinical implication of human exonic circular RNA
Dongbin Lyu et al.
RNA BIOLOGY (2017)
HnRNP-L promotes prostate cancer progression by enhancing cell cycling and inhibiting apoptosis
Xumin Zhou et al.
ONCOTARGET (2017)
Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1
Kotb Abdelmohsen et al.
RNA BIOLOGY (2017)
RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach
Xiaoyong Pan et al.
BMC BIOINFORMATICS (2017)
Circular RNAs: Identification, biogenesis and function
Karoline K. Ebbesen et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)
Convolutional neural network architectures for predicting DNA-protein binding
Haoyang Zeng et al.
BIOINFORMATICS (2016)
Circular RNAs: a new frontier in the study of human diseases
Yonghua Chen et al.
JOURNAL OF MEDICAL GENETICS (2016)
Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2
William W. Du et al.
NUCLEIC ACIDS RESEARCH (2016)
DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences
Daniel Quang et al.
NUCLEIC ACIDS RESEARCH (2016)
Mini Review: Circular RNAs as Potential Clinical Biomarkers for Disorders in the Central Nervous System
Dan Lu et al.
Frontiers in Genetics (2016)
circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations
Xiaoping Chen et al.
SCIENTIFIC REPORTS (2016)
Mechanisms of RNA loading into exosomes
Teresa Janas et al.
FEBS LETTERS (2015)
SRSF1-Regulated Alternative Splicing in Breast Cancer
Olga Anczukow et al.
MOLECULAR CELL (2015)
Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
Babak Alipanahi et al.
NATURE BIOTECHNOLOGY (2015)
Predicting effects of noncoding variants with deep learning-based sequence model
Jian Zhou et al.
NATURE METHODS (2015)
Deep Convolutional Neural Networks for Large-scale Speech Tasks
Tara N. Sainath et al.
NEURAL NETWORKS (2015)
Alternative splicing of TIA-1 in human colon cancer regulates VEGF isoform expression, angiogenesis, tumour growth and bevacizumab resistance
Maryarn A. Hamdollah Zadeh et al.
MOLECULAR ONCOLOGY (2015)
Brain metastasis is predetermined in early stages of cutaneous melanoma by CD44v6 expression through epigenetic regulation of the spliceosome
Diego M. Marzese et al.
PIGMENT CELL & MELANOMA RESEARCH (2015)
circBase: a database for circular RNAs
Petar Glazar et al.
RNA (2014)
GraphProt: modeling binding preferences of RNA-binding proteins
Daniel Maticzka et al.
GENOME BIOLOGY (2014)
A compendium of RNA-binding motifs for decoding gene regulation
Debashish Ray et al.
NATURE (2013)
Natural RNA circles function as efficient microRNA sponges
Thomas B. Hansen et al.
NATURE (2013)
Circular RNAs are abundant, conserved, and associated with ALU repeats
William R. Jeck et al.
RNA (2013)
Correction: Cell-Type Specific Features of Circular RNA Expression
Julia Salzman et al.
PLoS Genetics (2013)
Predicting RNA-Protein Interactions Using Only Sequence Information
Usha K. Muppirala et al.
BMC BIOINFORMATICS (2011)
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Markus Hafner et al.
CELL (2010)
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
Julian Koenig et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
Debashish Ray et al.
NATURE BIOTECHNOLOGY (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
Donny D. Licatalosi et al.
NATURE (2008)
Predictina protein-protein interactions based only on sequences information
Juwen Shen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Quantifying similarity between motifs
Shobhit Gupta et al.
GENOME BIOLOGY (2007)