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UniProt: the universal protein knowledgebase
Alex Bateman et al.
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Hashem A. Shihab et al.
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Daniel R. Roe et al.
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S. Zoe Fisher et al.
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Deepa Bhatt et al.
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D Bhatt et al.
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E Capriotti et al.
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I Elder et al.
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K Almstedt et al.
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HQ An et al.
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