相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Mycobiome diversity: high-throughput sequencing and identification of fungi
R. Henrik Nilsson et al.
NATURE REVIEWS MICROBIOLOGY (2019)
Differential soil microbial community responses to the linkage of soil organic carbon fractions with respiration across land-use changes
Chengjie Ren et al.
FOREST ECOLOGY AND MANAGEMENT (2018)
Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits
Jonathan W. Leff et al.
ISME JOURNAL (2018)
Responses of bacterial community to dibutyl phthalate pollution in a soil- vegetable ecosystem
Xiao Kong et al.
JOURNAL OF HAZARDOUS MATERIALS (2018)
More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers?
Ylva Lekberg et al.
NEW PHYTOLOGIST (2018)
Structure and function of the global topsoil microbiome
Mohammad Bahram et al.
NATURE (2018)
ITS all right mama: investigating the formation of chimeric sequences in the ITS2 region by DNA metabarcoding analyses of fungal mock communities of different complexities
Anders Bjornsgaard Aas et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Biodiversity and species competition regulate the resilience of microbial biofilm community
Kai Feng et al.
MOLECULAR ECOLOGY (2017)
A genome Tree of Life for the Fungi kingdom
JaeJin Choi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
Tobias Guldberg Froslev et al.
NATURE COMMUNICATIONS (2017)
Critical Issues in Mycobiota Analysis
Bettina Halwachs et al.
FRONTIERS IN MICROBIOLOGY (2017)
Novel ITS1 Fungal Primers for Characterization of the Mycobiome
Mykhaylo Usyk et al.
MSPHERE (2017)
Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota
Ibrahim Hamad et al.
SCIENTIFIC REPORTS (2017)
Degenerate ITS7 primer enhances oomycete community coverage and PCR sensitivity to Aphanomyces species, economically important plant pathogens
A. Esmaeili Taheri et al.
CANADIAN JOURNAL OF MICROBIOLOGY (2017)
The local environment determines the assembly of root endophytic fungi at a continental scale
Kyriaki Glynou et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
D. Lee Taylor et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
Rosalinda D'Amore et al.
BMC GENOMICS (2016)
Fungal community analysis in the deep-sea sediments of the Pacific Ocean assessed by comparison of ITS, 18S and 28S ribosomal DNA regions
Wei Xu et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2016)
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
Daryl M. Gohl et al.
NATURE BIOTECHNOLOGY (2016)
Phthalate esters in soil, plastic film, and vegetable from greenhouse vegetable production bases in Beijing, China: Concentrations, sources, and risk assessment
Cheng Li et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2016)
Fungal identification biases in microbiome projects
Leho Tedersoo et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)
Heterotrophic respiration does not acclimate to continuous warming in a subtropical forest
Chuansheng Wu et al.
SCIENTIFIC REPORTS (2016)
Polymerase matters: non-proofreading enzymes inflate fungal community richness estimates by up to 15 %
Alena K. Oliver et al.
FUNGAL ECOLOGY (2015)
Ecology and exploration of the rare biosphere
Michael D. J. Lynch et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
Leho Tedersoo et al.
MycoKeys (2015)
Parsing ecological signal from noise in next generation amplicon sequencing
Nhu H. Nguyen et al.
NEW PHYTOLOGIST (2015)
A first comprehensive census of fungi in soil reveals both hyperdiversity and fine-scale niche partitioning
D. Lee Taylor et al.
ECOLOGICAL MONOGRAPHS (2014)
Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies
Michiel Op De Beeck et al.
PLOS ONE (2014)
Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?
Petr Kohout et al.
SOIL BIOLOGY & BIOCHEMISTRY (2014)
Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities
Nicholas A. Bokulich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing
Cecile Monard et al.
FEMS MICROBIOLOGY ECOLOGY (2013)
Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities
Anna L. Bazzicalupo et al.
FUNGAL ECOLOGY (2013)
Enhanced root exudation stimulates soil nitrogen transformations in a subalpine coniferous forest under experimental warming
Huajun Yin et al.
GLOBAL CHANGE BIOLOGY (2013)
Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
Bjorn D. Lindahl et al.
NEW PHYTOLOGIST (2013)
ITS1 versus ITS2 as DNA metabarcodes for fungi
R. Blaalid et al.
MOLECULAR ECOLOGY RESOURCES (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
BLAST: a more efficient report with usability improvements
Grzegorz M. Boratyn et al.
NUCLEIC ACIDS RESEARCH (2013)
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Johan Bengtsson-Palme et al.
METHODS IN ECOLOGY AND EVOLUTION (2013)
Community composition of root-associated fungi in a Quercus-dominated temperate forest: codominance of mycorrhizal and root-endophytic fungi
Hirokazu Toju et al.
ECOLOGY AND EVOLUTION (2013)
The Rare Bacterial Biosphere
Carlos Pedros-Alio
ANNUAL REVIEW OF MARINE SCIENCE, VOL 4 (2012)
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification
R. Henrik Nilsson et al.
Evolutionary Bioinformatics (2012)
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
Katarina Ihrmark et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
Petr Baldrian et al.
ISME JOURNAL (2012)
Biodegradation of di-n-butyl phthalate by an isolated Gordonia sp strain QH-11: Genetic identification and degradation kinetics
Decai Jin et al.
JOURNAL OF HAZARDOUS MATERIALS (2012)
Optimal enzymes for amplifying sequencing libraries
Michael A. Quail et al.
NATURE METHODS (2012)
High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
Hirokazu Toju et al.
PLOS ONE (2012)
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schoch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
THE FUNGI: 1, 2, 3 ... 5.1 MILLION SPECIES?
Meredith Blackwell
AMERICAN JOURNAL OF BOTANY (2011)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Brian J. Haas et al.
GENOME RESEARCH (2011)
Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
Yong Kong
GENOMICS (2011)
Field guide to next-generation DNA sequencers
Travis C. Glenn
MOLECULAR ECOLOGY RESOURCES (2011)
ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds
Antonietta Mello et al.
MYCOLOGIA (2011)
Target Region Selection Is a Critical Determinant of Community Fingerprints Generated by 16S Pyrosequencing
Purnima S. Kumar et al.
PLOS ONE (2011)
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
Daniel Aird et al.
GENOME BIOLOGY (2011)
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
Eva Bellemain et al.
BMC MICROBIOLOGY (2010)
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
Anna Engelbrektson et al.
ISME JOURNAL (2010)
The UNITE database for molecular identification of fungi - recent updates and future perspectives
Kessy Abarenkov et al.
NEW PHYTOLOGIST (2010)
Fungal Diversity in Deep-Sea Hydrothermal Ecosystems
Thomas Le Calvez et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure
Julie A. Huber et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Quantification of the detrimental effect of a single primer-template mismatch by real-time PCR using the 16S rRNA gene as an example
D. Bru et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Global diversity and distribution of macrofungi
Gregory M. Mueller et al.
BIODIVERSITY AND CONSERVATION (2007)