相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genome Analysis of Shigella flexneri Serotype 3b Strain SFL1520 Reveals Significant Horizontal Gene Acquisitions Including a Multidrug Resistance Cassette
Pawan Parajuli et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Whole-genome-based analysis reveals multiclone Serratia marcescens outbreaks in a non-Neonatal Intensive Care Unit setting in a tertiary care hospital in India
Anusha Rohit et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2019)
Biofilm contamination of high-touched surfaces in intensive care units: epidemiology and potential impacts
D. M. Costa et al.
LETTERS IN APPLIED MICROBIOLOGY (2019)
New insights into culture negative endophthalmitis by unbiased next generation sequencing
Dhanshree Deshmukh et al.
SCIENTIFIC REPORTS (2019)
The co-transfer of plasmid-borne colistin-resistant genes mcr-1 and mcr-3.5, the carbapenemase gene blaNDM-5 and the 16S methylase gene rmtB from Escherichia coli
Haiyan Long et al.
SCIENTIFIC REPORTS (2019)
Strain- and Species-Level Variation in the Microbiome of Diabetic Wounds Is Associated with Clinical Outcomes and Therapeutic Efficacy
Lindsay R. Kalan et al.
CELL HOST & MICROBE (2019)
Nanopore sequencing: Review of potential applications in functional genomics
Nobuaki Kono et al.
DEVELOPMENT GROWTH & DIFFERENTIATION (2019)
Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid
Steve Miller et al.
GENOME RESEARCH (2019)
Commensal and Pathogenic Members of the Dental Calculus Microbiome of Badia Pozzeveri Individuals from the 11th to 19th Centuries
Tasha M. Santiago-Rodriguez et al.
GENES (2019)
Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis
M. R. Wilson et al.
NEW ENGLAND JOURNAL OF MEDICINE (2019)
FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science
Heike Sichtig et al.
NATURE COMMUNICATIONS (2019)
Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates
Pranita D. Tamma et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2019)
BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files
Alexander Payne et al.
BIOINFORMATICS (2019)
Next generation sequencing-based gene panel tests for the management of solid tumors
Masayuki Nagahashi et al.
CANCER SCIENCE (2019)
Genome-Based Prediction of Bacterial Antibiotic Resistance
Michelle Su et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2019)
Epidemiology and Mechanisms of Resistance of Extensively Drug Resistant Gram-Negative Bacteria
Emily M. Eichenberger et al.
ANTIBIOTICS-BASEL (2019)
MinION-based long-read sequencing and assembly extends the &ITCaenorhabditis elegans&IT reference genome
John R. Tyson et al.
GENOME RESEARCH (2018)
Resolution of dynamic MDR structures among the plasmidome of Salmonella using MinION single-molecule, long-read sequencing
Ruichao Li et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2018)
Emergence of a vancomycin-variable Enterococcus faecium ST1421 strain containing a deletion in vanX
Thomas Arn Hansen et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2018)
Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics
Patricia J. Simner et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2018)
Nanopore sequencing and assembly of a human genome with ultra-long reads
Miten Jain et al.
NATURE BIOTECHNOLOGY (2018)
Multicenter validation of cancer gene panel-based next-generation sequencing for translational research and molecular diagnostics
B. Hirsch et al.
VIRCHOWS ARCHIV (2018)
Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices
Nicholas D. Sanderson et al.
BMC GENOMICS (2018)
Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
Natacha Couto et al.
SCIENTIFIC REPORTS (2018)
Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection
Wei Gu et al.
Annual Review of Pathology-Mechanisms of Disease (2018)
Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer
Sae Ashikawa et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2018)
Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis
Jun Cheng et al.
ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS (2018)
Whole Genome Sequencing of Influenza A and B Viruses With the MinION Sequencer in the Clinical Setting: A Pilot Study
Kazuo Imai et al.
FRONTIERS IN MICROBIOLOGY (2018)
MinION as part of a biomedical rapidly deployable laboratory
Mathias C. Walter et al.
JOURNAL OF BIOTECHNOLOGY (2017)
Application of next generation sequencing in clinical microbiology and infection prevention
Ruud H. Deurenberg et al.
JOURNAL OF BIOTECHNOLOGY (2017)
Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates
Jamie K. Lemon et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2017)
Microbiology and Antimicrobial Challenges of Prosthetic Joint Infection
Douglas R. Osmon
JOURNAL OF THE AMERICAN ACADEMY OF ORTHOPAEDIC SURGEONS (2017)
Introducing the Microbiome into Precision Medicine
Thomas M. Kuntz et al.
TRENDS IN PHARMACOLOGICAL SCIENCES (2017)
First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans)
Ruibang Luo et al.
G3-GENES GENOMES GENETICS (2017)
In Situ Field Sequencing and Life Detection in Remote (79°26′N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities
J. Goordial et al.
FRONTIERS IN MICROBIOLOGY (2017)
Metagenomics: The Next Culture-Independent Game Changer
Jessica D. Forbes et al.
FRONTIERS IN MICROBIOLOGY (2017)
Campylobacter fetus meningitis confirmed by a 16S rRNA gene analysis using the MinION nanopore sequencer, South Korea, 2016
Jangsup Moon et al.
EMERGING MICROBES & INFECTIONS (2017)
Community characteristics of the gut microbiomes of competitive cyclists
Lauren M. Petersen et al.
MICROBIOME (2017)
Nanopore DNA Sequencing and Genome Assembly on the International Space Station
Sarah L. Castro-Wallace et al.
SCIENTIFIC REPORTS (2017)
Completing bacterial genome assemblies with multiplex MinION sequencing
Ryan R. Wick et al.
MICROBIAL GENOMICS (2017)
Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection
Robert Schlaberg et al.
ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2017)
Real-time, portable genome sequencing for Ebola surveillance
Joshua Quick et al.
NATURE (2016)
Antibiotics and the Human Gut Microbiome: Dysbiosesand Accumulation of Resistances
M. P. Francino
FRONTIERS IN MICROBIOLOGY (2016)
Oxford Nanopore MinION Sequencing and Genome Assembly
Hengyun Lu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2016)
The Human Microbiome and the Future Practice of Medicine
David A. Relman
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2015)
Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes
Kim Judge et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)
Next-Generation Sequencing for Infectious Disease Diagnosis and Management A Report of the Association for Molecular Pathology
Martina I. Lefterova et al.
JOURNAL OF MOLECULAR DIAGNOSTICS (2015)
Making the Leap from Research Laboratory to Clinic: Challenges and Opportunities for Next-Generation Sequencing in Infectious Disease Diagnostics
Brittany Goldberg et al.
MBIO (2015)
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
Alexander L. Greninger et al.
GENOME MEDICINE (2015)
Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
Andy Kilianski et al.
GIGASCIENCE (2015)
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
Mincheol Kim et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schoch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
Les Dethlefsen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes
Jeremy A. Frank et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Next-generation DNA sequencing
Jay Shendure et al.
NATURE BIOTECHNOLOGY (2008)
16S rRNA sequencing in routine bacterial identification: A 30-month experiment
S. Mignard et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2006)
The role of 16S rRNA gene sequencing in identification of microorganisms misidentified by conventional methods
CA Petti et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)