4.7 Article

Transcriptomic and presence/absence variation in the barley genome assessed from multi-tissue mRNA sequencing and their power to predict phenotypic traits

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Genetics & Heredity

Genebank genomics highlights the diversity of a global barley collection

Sara G. Milner et al.

NATURE GENETICS (2019)

Review Agronomy

Prospects of pan-genomics in barley

Cecile Monat et al.

THEORETICAL AND APPLIED GENETICS (2019)

Review Agronomy

Connecting genome structural variation with complex traits in crop plants

Iulian Gabur et al.

THEORETICAL AND APPLIED GENETICS (2019)

Article Biotechnology & Applied Microbiology

BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing

Daniel Alpern et al.

GENOME BIOLOGY (2019)

Article Biotechnology & Applied Microbiology

Finding invisible quantitative trait loci with missing data

Iulian Gabur et al.

PLANT BIOTECHNOLOGY JOURNAL (2018)

Article Plant Sciences

Prospects and Potential Uses of Genomic Prediction of Key Performance Traits in Tetraploid Potato

Benjamin Stich et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Multidisciplinary Sciences

A chromosome conformation capture ordered sequence of the barley genome

Martin Mascher et al.

NATURE (2017)

Review Plant Sciences

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

Jose Crossa et al.

TRENDS IN PLANT SCIENCE (2017)

Article Plant Sciences

Development and Evaluation of a Barley 50k iSelect SNP Array

Micha M. Bayer et al.

FRONTIERS IN PLANT SCIENCE (2017)

Review Biochemistry & Molecular Biology

Genotypic Context and Epistasis in Individuals and Populations

Timothy B. Sackton et al.

Article Multidisciplinary Sciences

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

Giovanny Covarrubias-Pazaran

PLOS ONE (2016)

Article Biotechnology & Applied Microbiology

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Mihaela Pertea et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Review Plant Sciences

Barley: a translational model for adaptation to climate change

Ian K. Dawson et al.

NEW PHYTOLOGIST (2015)

Article Biochemistry & Molecular Biology

Presence-Absence Variation in A-thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints

Stephen J. Bush et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Insights into the Maize Pan-Genome and Pan-Transcriptome

Candice N. Hirsch et al.

PLANT CELL (2014)

Review Plant Sciences

Genomic selection: genome-wide prediction in plant improvement

Zeratsion Abera Desta et al.

TRENDS IN PLANT SCIENCE (2014)

Article Genetics & Heredity

Genomic Predictability of Interconnected Biparental Maize Populations

Christian Riedelsheimer et al.

GENETICS (2013)

Article Biotechnology & Applied Microbiology

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

Maria Munoz-Amatriain et al.

GENOME BIOLOGY (2013)

Article Evolutionary Biology

Variation of presence/absence genes among Arabidopsis populations

Shengjun Tan et al.

BMC EVOLUTIONARY BIOLOGY (2012)

Article Genetics & Heredity

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

Christian Riedelsheimer et al.

NATURE GENETICS (2012)

Article Plant Sciences

Identification of High-Temperature-Responsive Genes in Cereals

Megan N. Hemming et al.

PLANT PHYSIOLOGY (2012)

Article Multidisciplinary Sciences

Evolution of wild cereals during 28 years of global warming in Israel

Eviatar Nevo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Editorial Material Multidisciplinary Sciences

What Next for Agriculture After Durban?

J. R. Beddington et al.

SCIENCE (2012)

Article Biochemical Research Methods

Extension of the bayesian alphabet for genomic selection

David Habier et al.

BMC BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Transcriptome Analysis of the Vernalization Response in Barley (Hordeum vulgare) Seedlings

Aaron G. Greenup et al.

PLOS ONE (2011)

Article Genetics & Heredity

Genome-wide patterns of genetic variation among elite maize inbred lines

Jinsheng Lai et al.

NATURE GENETICS (2010)

Article Multidisciplinary Sciences

An eQTL Analysis of Partial Resistance to Puccinia hordei in Barley

Xinwei Chen et al.

PLOS ONE (2010)

Article Agronomy

Plant Breeding with Genomic Selection: Gain per Unit Time and Cost

Elliot L. Heffner et al.

CROP SCIENCE (2010)

Article Genetics & Heredity

Increased accuracy of artificial selection by using the realized relationship matrix

B. J. Hayes et al.

GENETICS RESEARCH (2009)

Article Agriculture, Dairy & Animal Science

Efficient Methods to Compute Genomic Predictions

P. M. VanRaden

JOURNAL OF DAIRY SCIENCE (2008)

Article Statistics & Probability

The Bayesian Lasso

Trevor Park et al.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2008)

Article Plant Sciences

Tissue-dependent limited pleiotropy affects gene expression in barley

Elena Potokina et al.

PLANT JOURNAL (2008)

Review Agriculture, Dairy & Animal Science

Genomic selection

M. E. Goddard et al.

JOURNAL OF ANIMAL BREEDING AND GENETICS (2007)

Article Multidisciplinary Sciences

All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents

RA Swanson-Wagner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Plant Sciences

A new resource for cereal genomics: 22K barley GeneChip comes of age

TJ Close et al.

PLANT PHYSIOLOGY (2004)