相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Small RNA expression from viruses, bacteria and human miRNAs in colon cancer tissue and its association with microsatellite instability and tumor location
Robin Mjelle et al.
BMC CANCER (2019)
Colonic adenoma-associated Escherichia coli express specific phenotypes
Cecilia Ambrosi et al.
MICROBES AND INFECTION (2019)
The human gut bacterial genotoxin colibactin alkylates DNA
Matthew R. Wilson et al.
SCIENCE (2019)
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Andrew Maltez Thomas et al.
NATURE MEDICINE (2019)
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
Jakob Wirbel et al.
NATURE MEDICINE (2019)
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2019)
RNAcentral: a hub of information for non-coding RNA sequences (vol 47, pg D221, 2019)
Blake A. Sweeney et al.
NUCLEIC ACIDS RESEARCH (2019)
Small non-coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: description of the diverse and most represented species
Giulio Ferrero et al.
ONCOTARGET (2018)
Disbiome database: linking the microbiome to disease
Yorick Janssens et al.
BMC MICROBIOLOGY (2018)
The Intestinal Microbiota in Colorectal Cancer
Herbert Tilg et al.
CANCER CELL (2018)
E-coli and colorectal cancer: a complex relationship that deserves a critical mindset
Trudy M. Wassenaar
CRITICAL REVIEWS IN MICROBIOLOGY (2018)
Bacterial RNA Biology on a Genome Scale
Jens Hoer et al.
MOLECULAR CELL (2018)
The microbiome in cancer immunotherapy: Diagnostic tools and therapeutic strategies
Laurence Zitvogel et al.
SCIENCE (2018)
Colibactin: More Than a New Bacterial Toxin
Tiphanie Fais et al.
TOXINS (2018)
Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Zhenwei Dai et al.
MICROBIOME (2018)
Interaction between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer
Ce Yuan et al.
MSYSTEMS (2018)
Let-7b ameliorates Crohn's disease-associated adherent-invasive E coli induced intestinal inflammation via modulating Toll-Like Receptor 4 expression in intestinal epithelial cells
Zhen Guo et al.
BIOCHEMICAL PHARMACOLOGY (2018)
Expression profiling of peripheral blood miRNA using RNAseq technology in dairy cows with Escherichia coli-induced mastitis
Zhuo-Ma Luoreng et al.
SCIENTIFIC REPORTS (2018)
Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines
Neha Kulkarni et al.
BMC BIOINFORMATICS (2018)
Relationship between Fusobacterium nucleatum, inflammatory mediators and microRNAs in colorectal carcinogenesis
Marcela Alcantara Proenca et al.
WORLD JOURNAL OF GASTROENTEROLOGY (2018)
Origin, Evolution, and Loss of Bacterial Small RNAs
H. Auguste Dutcher et al.
MICROBIOLOGY SPECTRUM (2018)
miRNAs reshape immunity and inflammatory responses in bacterial infection
Xikun Zhou et al.
SIGNAL TRANSDUCTION AND TARGETED THERAPY (2018)
ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues
Serghei Mangul et al.
GENOME BIOLOGY (2018)
Identification and functional characterization of bacterial small non-coding RNAs and their target: A review
Waqas Ahmed et al.
GENE REPORTS (2018)
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer
Jun Yu et al.
GUT (2017)
miRPathDB: a new dictionary on microRNAs and target pathways
Christina Backes et al.
NUCLEIC ACIDS RESEARCH (2017)
Fusobacterium nucleatum Increases Proliferation of Colorectal Cancer Cells and Tumor Development in Mice by Activating Toll-Like Receptor 4 Signaling to Nuclear Factor-κB, and Up-regulating Expression of MicroRNA-21
Yongzhi Yang et al.
GASTROENTEROLOGY (2017)
Shotgun metagenomics, from sampling to analysis
Christopher Quince et al.
NATURE BIOTECHNOLOGY (2017)
MicroRNAs-Based Inter-Domain Communication between the Host and Members of the Gut Microbiome
Maggie R. Williams et al.
FRONTIERS IN MICROBIOLOGY (2017)
Human microbiome signatures of differential colorectal cancer drug metabolism
Leah Guthrie et al.
NPJ BIOFILMS AND MICROBIOMES (2017)
Cross sectional evaluation of the gut-microbiome metabolome axis in an Italian cohort of IBD patients
Maria Laura Santoru et al.
SCIENTIFIC REPORTS (2017)
Interactions between microsatellite instability and human gut colonization by Escherichia coli in colorectal cancer
Johan Gagniere et al.
CLINICAL SCIENCE (2017)
DASHR: database of small human noncoding RNAs
Yuk Yee Leung et al.
NUCLEIC ACIDS RESEARCH (2016)
Signature miRNAs in colorectal cancers were revealed using a bias reduction small RNA deep sequencing protocol
Guihua Sun et al.
ONCOTARGET (2016)
Gut Microbiota, Inflammation, and Colorectal Cancer
Caitlin A. Brennan et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 70 (2016)
Identification of microRNAs regulating Escherichia coli F18 infection in Meishan weaned piglets
Zhengchang Wu et al.
BIOLOGY DIRECT (2016)
The Host Shapes the Gut Microbiota via Fecal MicroRNA
Shirong Liu et al.
CELL HOST & MICROBE (2016)
Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing
Emily Vogtmann et al.
PLOS ONE (2016)
miRiadne: a web tool for consistent integration of miRNA nomenclature
Raoul J. P. Bonnal et al.
NUCLEIC ACIDS RESEARCH (2015)
Gut microbiome development along the colorectal adenoma-carcinoma sequence
Qiang Feng et al.
NATURE COMMUNICATIONS (2015)
Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli
Geunu Bak et al.
SCIENTIFIC REPORTS (2015)
MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing
M. Neerincx et al.
ONCOGENESIS (2015)
6S RNA, a Global Regulator of Transcription in Escherichia coli, Bacillus subtilis, and Beyond
Amy T. Cavanagh et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 68 (2014)
Microbes, Microbiota, and Colon Cancer
Cynthia L. Sears et al.
CELL HOST & MICROBE (2014)
MicroRNAs in the interaction between host and bacterial pathogens
Claire Maudet et al.
FEBS LETTERS (2014)
Crohn's Disease-Associated Adherent Invasive Escherichia coli Modulate Levels of microRNAs in Intestinal Epithelial Cells to Reduce Autophagy
Hang Thi Thu Nguyen et al.
GASTROENTEROLOGY (2014)
Potential of fecal microbiota for early-stage detection of colorectal cancer
Georg Zeller et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
miRBase: annotating high confidence microRNAs using deep sequencing data
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2014)
piRBase: a web resource assisting piRNA functional study
Peng Zhang et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)
Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples
Michael J. Strong et al.
PLOS PATHOGENS (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
miRCancer: a microRNA-cancer association database constructed by text mining on literature
Boya Xie et al.
BIOINFORMATICS (2013)
BSRD: a repository for bacterial small regulatory RNA
Lei Li et al.
NUCLEIC ACIDS RESEARCH (2013)
Computational Small RNA Prediction in Bacteria
Jayavel Sridhar et al.
BIOINFORMATICS AND BIOLOGY INSIGHTS (2013)
Whole blood-derived microRNA signatures in mice exposed to lipopolysaccharides
Ching-Hua Hsieh et al.
JOURNAL OF BIOMEDICAL SCIENCE (2012)
Infection strategies of enteric pathogenic Escherichia coli
Abigail Clements et al.
GUT MICROBES (2012)
ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
Microbiota Modulate Host Gene Expression via MicroRNAs
Guillaume Dalmasso et al.
PLOS ONE (2011)
Translational Regulation of Gene Expression by an Anaerobically Induced Small Non-coding RNA in Escherichia coli
Anders Boysen et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Enterocyte TLR4 mediates phagocytosis and translocation of bacteria across the intestinal barrier
Matthew D. Neal et al.
JOURNAL OF IMMUNOLOGY (2006)
LPS, TLR4 and infectious disease diversity
SI Miller et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Widespread selection for local RNA secondary structure in coding regions of bacterial genes
L Katz et al.
GENOME RESEARCH (2003)
分享论文
