相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities
Cresten Mansfeldt et al.
ISME JOURNAL (2019)
Abundance and diversity of anammox bacteria in a mainstream municipal wastewater treatment plant
Ali Nejidat et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)
Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis
Jinqiu Xiao et al.
JOURNAL OF PROTEOME RESEARCH (2018)
Assessing the impact of protein extraction methods for human gut metaproteomics
Xu Zhang et al.
JOURNAL OF PROTEOMICS (2018)
The social network of microorganisms - how auxotrophies shape complex communities
Karsten Zengler et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Aggregation ability of three phylogenetically distant anammox bacterial species
Muhammad Ali et al.
WATER RESEARCH (2018)
Genome-Centered Metagenomics Analysis Reveals the Symbiotic Organisms Possessing Ability to Cross-Feed with Anammox Bacteria in Anammox Consortia
Yunpeng Zhao et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
Draft Genome Sequence of a Candidatus Brocadia Bacterium Enriched from Activated Sludge Collected in a Tropical Climate
Xianghui Liu et al.
GENOME ANNOUNCEMENTS (2018)
Whole-Community Metagenomics in Two Different Anammox Configurations: Process Performance and Community Structure
Ananda S. Bhattacharjee et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2017)
Integrated metabolism in sponge-microbe symbiosis revealed by genome-centered metatranscriptomics
Lucas Moitinho-Silva et al.
ISME JOURNAL (2017)
Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase
Jonathan D. Caranto et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Mainstream upflow nitritation-anammox system with hybrid anaerobic pretreatment: Long-term performance and microbial community dynamics
Xiaojin Li et al.
WATER RESEARCH (2017)
Microbial competition among anammox bacteria in nitrite-limited bioreactors
Lei Zhang et al.
WATER RESEARCH (2017)
Metabolic network analysis reveals microbial community interactions in anammox granules
Christopher E. Lawson et al.
NATURE COMMUNICATIONS (2017)
Upgrading of the symbiosis of Nitrosomanas and anammox bacteria in a novel single-stage partial nitritation-anammox system: Nitrogen removal potential and Microbial characterization
Yuan Liu et al.
BIORESOURCE TECHNOLOGY (2017)
Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm
Jeremy J. Barr et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
2016 update of the PRIDE database and its related tools
Juan Antonio Vizcaino et al.
NUCLEIC ACIDS RESEARCH (2016)
Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors
Neil D. Rawlings et al.
NUCLEIC ACIDS RESEARCH (2016)
Metagenomic analysis of anammox communities in three different microbial aggregates
Jianhua Guo et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
Minoru Kanehisa et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
The evolution of cooperation within the gut microbiota
Seth Rakoff-Nahoum et al.
NATURE (2016)
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
Stefka Tyanova et al.
NATURE PROTOCOLS (2016)
Nitrogen removal by granular nitritation-anammox in an upflow membrane-aerated biofilm reactor
Xiaojin Li et al.
WATER RESEARCH (2016)
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Karthik Anantharaman et al.
NATURE COMMUNICATIONS (2016)
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system
Daan R. Speth et al.
NATURE COMMUNICATIONS (2016)
MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota
Xu Zhang et al.
MICROBIOME (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Unraveling interactions in microbial communities - from co-cultures to microbiomes
Justin Tan et al.
JOURNAL OF MICROBIOLOGY (2015)
Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria
Gunter Wegener et al.
NATURE (2015)
Deterministic processes vary during community assembly for ecologically dissimilar taxa
Jeff R. Powell et al.
NATURE COMMUNICATIONS (2015)
Differentiation in the Microbial Ecology and Activity of Suspended and Attached Bacteria in a Nitritation-Anammox Process
Hongkeun Park et al.
BIOTECHNOLOGY AND BIOENGINEERING (2015)
Microbial Community Composition and Ultrastructure of Granules from a Full-Scale Anammox Reactor
Graciela Gonzalez-Gil et al.
MICROBIAL ECOLOGY (2015)
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
Juergen Cox et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
Clifford A. Meyer et al.
NATURE REVIEWS GENETICS (2014)
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Pablo Yarza et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Metaproteomics: Evaluation of protein extraction from activated sludge
Susan Hove Hansen et al.
PROTEOMICS (2014)
Full-scale partial nitritation/anammox experiences - An application survey
Susanne Lackner et al.
WATER RESEARCH (2014)
Shotgun metagenomic data reveals significant abundance but low diversity of Candidatus Scalindua marine anammox bacteria in the Arabian Sea oxygen minimum zone
Laura Villanueva et al.
FRONTIERS IN MICROBIOLOGY (2014)
Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria
Puntipar Sonthiphand et al.
FRONTIERS IN MICROBIOLOGY (2014)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
Gijs den Besten et al.
JOURNAL OF LIPID RESEARCH (2013)
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Mads Albertsen et al.
NATURE BIOTECHNOLOGY (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria
Harry R. Harhangi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
Yanbin Yin et al.
NUCLEIC ACIDS RESEARCH (2012)
The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
J. Jeffrey Morris et al.
MBIO (2012)
The feasibility of using a two-stage autotrophic nitrogen removal process to treat sewage
Bin Ma et al.
BIORESOURCE TECHNOLOGY (2011)
Eating For Two: How Metabolism Establishes lnterspecies Interactions in the Gut
Michael A. Fischbach et al.
CELL HOST & MICROBE (2011)
Function-specific response to depletion of microbial diversity
Hannes Peter et al.
ISME JOURNAL (2011)
Molecular mechanism of anaerobic ammonium oxidation
Boran Kartal et al.
NATURE (2011)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
J. Gregory Caporaso et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Competitive and cooperative metabolic interactions in bacterial communities
Shiri Freilich et al.
NATURE COMMUNICATIONS (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
Nancy Y. Yu et al.
BIOINFORMATICS (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Nitrogen removal performance and microbial community analysis of an anaerobic up-flow granular bed anammox reactor
Sunja Cho et al.
CHEMOSPHERE (2010)
IMG ER: a system for microbial genome annotation expert review and curation
Victor M. Markowitz et al.
BIOINFORMATICS (2009)
Biochemistry and molecular biology of anammox bacteria
Mike S. M. Jetten et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2009)
Full-Scale Nitrogen Removal from Digester Liquid with Partial Nitritation and Anammox in One SBR
Adriano Joss et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2009)
The membrane bioreactor: A novel tool to grow anammox bacteria as free cells
Wouter R. L. van der Star et al.
BIOTECHNOLOGY AND BIOENGINEERING (2008)
Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity
Markus C. Schmid et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium
Boran Kartal et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution
M. van de Guchte et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
M Strous et al.
NATURE (2006)
Biological treatment of sludge digester liquids
M. C. M. van Loosdrecht et al.
WATER SCIENCE AND TECHNOLOGY (2006)
Completely autotrophic nitrogen removal over nitrite in one single reactor
AO Sliekers et al.
WATER RESEARCH (2002)
The CANON system (completely autotrophic nitrogen-removal over nitrite) under ammonium limitation: Interaction and competition between three groups of bacteria
KA Third et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2001)
The SHARON((R))-Anammox((R)) process for treatment of ammonium rich wastewater
U van Dongen et al.
WATER SCIENCE AND TECHNOLOGY (2001)
Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation
M Schmid et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2000)
分享论文
