4.6 Article

Whole-Genome Sequencing Redefines Shewanella Taxonomy

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Microbiology

International Code of Nomenclature of Prokaryotes Prokaryotic Code (2008 Revision)

Charles T. Parker et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Multidisciplinary Sciences

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

Jan P. Meier-Kolthoff et al.

NATURE COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

The Pfam protein families database in 2019

Sara El-Gebali et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Microbiology

LPSN - List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on

Aidan C. Parte

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Microbiology

Whole-genome sequencing reveals that Shewanella haliotis Kim et al. 2007 can be considered a later heterotypic synonym of Shewanella algae Simidu et al. 1990

Nadia Szeinbaum et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Microbiology

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Alterations in the gut bacterial microbiome in fungal Keratitis patients

Sama Kalyana Chakravarthy et al.

PLOS ONE (2018)

Article Gastroenterology & Hepatology

Tumour-associated and non-tumour-associated microbiota in colorectal cancer

Burkhardt Flemer et al.

Article Biochemistry & Molecular Biology

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

Aron Marchler-Bauer et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Microbiology

Shewanella carassii sp nov., isolated from surface swabs of crucian carp and faeces of a diarrhoea patient

Yujie Fang et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

One Enzyme, Three Metabolites: Shewanella algae Controls Siderophore Production via the Cellular Substrate Pool

Sina Ruetschlin et al.

CELL CHEMICAL BIOLOGY (2017)

Review Biochemistry & Molecular Biology

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

Minoru Kanehisa et al.

JOURNAL OF MOLECULAR BIOLOGY (2016)

Article Biochemical Research Methods

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page et al.

BIOINFORMATICS (2015)

Article Microbiology

Shewanella mangrovi sp nov., an acetaldehyde-degrading bacterium isolated from mangrove sediment

Yang Liu et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Microbiology

Cautionary tale of using 16S rRNA gene sequence similarity values in identification of human-associated bacterial species

Morgane Rossi-Tamisier et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program

Vincent Lefort et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

Genomic insights into the taxonomic status of the Bacillus cereus group

Yang Liu et al.

SCIENTIFIC REPORTS (2015)

Article Chemistry, Multidisciplinary

A Chimeric Siderophore Halts Swarming Vibrio

Thomas Boettcher et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Computer Science, Software Engineering

Highly parallelized inference of large genome-based phylogenies

Jan P. Meier-Kolthoff et al.

CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE (2014)

Article Microbiology

When should a DDH experiment be mandatory in microbial taxonomy?

Jan P. Meier-Kolthoff et al.

ARCHIVES OF MICROBIOLOGY (2013)

Article Biochemical Research Methods

Genome sequence-based species delimitation with confidence intervals and improved distance functions

Jan P. Meier-Kolthoff et al.

BMC BIOINFORMATICS (2013)

Article Microbiology

Shewanella arctica sp nov., an iron-reducing bacterium isolated from Arctic marine sediment

So-Jeong Kim et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)

Article Microbiology

Shewanella indica sp nov., isolated from sediment of the Arabian Sea

Pankaj Verma et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)

Article Genetics & Heredity

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

Alexander F. Auch et al.

STANDARDS IN GENOMIC SCIENCES (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Microbiology

Shewanella marina sp nov., isolated from seawater

Seong Chan Park et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2009)

Article Microbiology

Shewanella chilikensis sp nov., a moderately alkaliphilic gammaproteobacterium isolated from a lagoon

K. Sucharita et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2009)

Article Microbiology

Shewanella vesiculosa sp nov., a psychrotolerant bacterium isolated from an Antarctic coastal area

Nuria Lozal et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Molecular Taxonomy of Phytopathogenic Fungi: A Case Study in Peronospora

Markus Goeker et al.

PLOS ONE (2009)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Microbiology

Shewanella haliotis sp nov., isolated from the gut microflora of abalone, Haliotis discus hannai

Duwoon Kim et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Microbiology

Shewanella psychrophila sp nov and Shewanella piezotolerans sp nov., isolated from west Pacific deep-sea sediment

Xiang Xiao et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Microbiology

Shewanella loihica sp nov., isolated from iron-rich microbial mats in the Pacific Ocean

Haichun Gao et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Microbiology

Shewanella halifaxensis sp nov., a novel obligately respiratory and denitrifying psychrophile

JS Zhao et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Microbiology

Shewanella hafniensis sp nov and Shewanella morhuae sp nov., isolated from marine fish of the Baltic Sea

M Satomi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Microbiology

Shewanella sediminis sp nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-trinitro-degrading bacterium from marine sediment

JS Zhao et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)

Article Microbiology

Shewanella decolorationis sp nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant

MY Xu et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)

Article Microbiology

Shewanella waksmanii sp nov., isolated from a sipuncula (Phascolosoma japonicum)

EP Ivanova et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)

Article Microbiology

Shewanella fidelis sp nov., isolated from sediments and sea water

EP Ivanova et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis

JF Heidelberg et al.

NATURE BIOTECHNOLOGY (2002)

Article Microbiology

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

E Stackebrandt et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2002)

Article Microbiology

Shewanella frigidimarina and Shewanella livingstonensis sp nov isolated from Antarctic coastal areas

N Bozal et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2002)

Article Microbiology

Shewanella japonica sp nov.

EP Ivanova et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)