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Jose M. Cuevas et al.
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Steffen Erkelenz et al.
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Dorota Piekna-Przybylska et al.
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Jonathan D. Steckbeck et al.
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Elizabeth Pollom et al.
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Karen E. Ocwieja et al.
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ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
Nature, Position, and Frequency of Mutations Made in a Single Cycle of HIV-1 Replication
Michael E. Abram et al.
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Architecture and secondary structure of an entire HIV-1 RNA genome
Joseph M. Watts et al.
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RNAalifold: improved consensus structure prediction for RNA alignments
Stephan H. Bernhart et al.
BMC BIOINFORMATICS (2008)
Negative and positive mRNA splicing elements act competitively to regulate human immunodeficiency virus type 1 Vif gene expression
C. M. Exline et al.
JOURNAL OF VIROLOGY (2008)
Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene
Qi Wang et al.
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Julia R. Gog et al.
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The strength of the HIV-I 3′ splice sites affects Rev function
Susanne Kammler et al.
RETROVIROLOGY (2006)
The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation (vol 44, pg 25, 2005)
TEM Abbink et al.
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
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First snapshots of the HIV-1 RNA structure in infected cells and in virions
JC Paillart et al.
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WebLogo: A sequence logo generator
GE Crooks et al.
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M Freund et al.
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Intragenic HIV-1 env sequences that enhance Gag expression
O Suptawiwat et al.
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hnRNP A1 controls HIV-1 mRNA splicing through cooperative binding to intron and exon splicing silencers in the context of a conserved secondary structure
CK Damgaard et al.
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Pushing the limits of the scanning mechanism for initiation of translation
M Kozak
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RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene
O Peleg et al.
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Secondary structure prediction for aligned RNA sequences
IL Hofacker et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Correlation between sequence conservation of the 5′ untranslated region and codon usage bias in Mus musculus genes
H Sakai et al.
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SF2/ASF binds to a splicing enhancer in the third HIV-1 tat exon and stimulates U2AF binding independently of the RS domain
TO Tange et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
The sequence complementarity between HIV-1 5′ splice site SD4 and U1 snRNA determines the steady-state level of an unstable env pre-mRNA
S Kammler et al.
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Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3′ splice site and its cis-regulatory element:: possible involvement in RNA splicing
S Jacquenet et al.
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Two alternating structures of the HIV-1 leader RNA
H Huthoff et al.
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