相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction
Diego A. A. Morais et al.
BIOINFORMATICS (2019)
Far-Red Light Detection in the Shoot Regulates Lateral Root Development through the HY5 Transcription Factor
Kasper van Gelderen et al.
PLANT CELL (2018)
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2017)
RNA-Seq methods for transcriptome analysis
Radmila Hrdlickova et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2017)
Expression of Root Genes in Arabidopsis Seedlings Grown by Standard and Improved Growing Methods
Yanli Qu et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)
Coordination of Cryptochrome and Phytochrome Signals in the Regulation of Plant Light Responses
Jun Su et al.
AGRONOMY-BASEL (2017)
RNA-Seq differential expression analysis: An extended review and a software tool
Juliana Costa-Silva et al.
PLOS ONE (2017)
Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness
Michiru Nishita et al.
SCIENTIFIC REPORTS (2017)
Transcriptional Analysis Allows Genome Reannotation and Reveals that Cryptococcus gattii VGII Undergoes Nutrient Restriction during Infection
Patricia Aline Grohs Ferrareze et al.
MICROORGANISMS (2017)
Shoot-to-Root Mobile Transcription Factor HY5 Coordinates Plant Carbon and Nitrogen Acquisition
Xiangbin Chen et al.
CURRENT BIOLOGY (2016)
Flavonols Mediate Root Phototropism and Growth through Regulation of Proliferation-to-Differentiation Transition
Javier Silva-Navas et al.
PLANT CELL (2016)
Master and servant: Regulation of auxin transporters by FKBPs and cyclophilins
Markus Geisler et al.
PLANT SCIENCE (2016)
Stem-piped light activates phytochrome B to trigger light responses in Arabidopsis thaliana roots
Hyo-Jun Lee et al.
SCIENCE SIGNALING (2016)
Stem-piped light activates phytochrome B to trigger light responses in Arabidopsis thaliana roots
Hyo-Jun Lee et al.
SCIENCE SIGNALING (2016)
Transcriptome analysis reveals manifold mechanisms of cyst development in ADPKD
Rita M. C. de Almeida et al.
HUMAN GENOMICS (2016)
Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling (vol 137, pg 3245, 2010)
Pankaj Dhonukshe et al.
DEVELOPMENT (2015)
The cyclophilin A DIAGEOTROPICA gene affects auxin transport in both root and shoot to control lateral root formation
Maria G. Ivanchenko et al.
DEVELOPMENT (2015)
D-Root: a system for cultivating plants with the roots in darkness or under different light conditions
Javier Silva-Navas et al.
PLANT JOURNAL (2015)
A tomato phloem-mobile protein regulates the shoot-to-root ratio by mediating the auxin response in distant organs
Ziv Spiegelman et al.
PLANT JOURNAL (2015)
Gene Expression Regulation in Photomorphogenesis from the Perspective of the Central Dogma
Shu-Hsing Wu
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)
Auxin Overproduction in Shoots Cannot Rescue Auxin Deficiencies in Arabidopsis Roots
Qingguo Chen et al.
PLANT AND CELL PHYSIOLOGY (2014)
A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data
Zong Hong Zhang et al.
PLOS ONE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
A comparison of methods for differential expression analysis of RNA-seq data
Charlotte Soneson et al.
BMC BIOINFORMATICS (2013)
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Yang Liao et al.
NUCLEIC ACIDS RESEARCH (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
WAG2 represses apical hook opening downstream from gibberellin and PHYTOCHROME INTERACTING FACTOR 5
Bjoern C. Willige et al.
DEVELOPMENT (2012)
COP1 mediates the coordination of root and shoot growth by light through modulation of PIN1-and PIN2-dependent auxin transport in Arabidopsis
Massimiliano Sassi et al.
DEVELOPMENT (2012)
The cyclophilin ROC1 links phytochrome and cryptochrome to brassinosteroid sensitivity
Santiago A. Trupkin et al.
PLANT JOURNAL (2012)
Photosynthetic sucrose acts as cotyledon-derived long-distance signal to control root growth during early seedling development in Arabidopsis
Stefan Kircher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Genomic basis for light control of plant development
Jigang Li et al.
PROTEIN & CELL (2012)
Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case
Jose Luiz Rybarczyk-Filho et al.
NUCLEIC ACIDS RESEARCH (2011)
Phosphorylation of Conserved PIN Motifs Directs Arabidopsis PIN1 Polarity and Auxin Transport
Fang Huang et al.
PLANT CELL (2010)
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
Steffen Durinck et al.
NATURE PROTOCOLS (2009)
An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis
Sara V. Petersson et al.
PLANT CELL (2009)
Hormone interactions during lateral root formation
Hidehiro Fukaki et al.
PLANT MOLECULAR BIOLOGY (2009)
QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR
Samuel Arvidsson et al.
BMC BIOINFORMATICS (2008)
Light Plays an Essential Role in Intracellular Distribution of Auxin Efflux Carrier PIN2 in Arabidopsis thaliana
Ashverya Laxmi et al.
PLOS ONE (2008)
Phytochrome coordinates Arabidopsis shoot and root development
Frances J. Salisbury et al.
PLANT JOURNAL (2007)
Functional ecology of a blue light photoreceptor: effects of phototropin-1 on root growth enhance drought tolerance in Arabidopsis thaliana
Candace Galen et al.
NEW PHYTOLOGIST (2007)
Light-regulated transcriptional networks in higher plants
Yuling Jiao et al.
NATURE REVIEWS GENETICS (2007)
The WAG1 and WAG2 protein kinases negatively regulate root waving in Arabidopsis
AA Santner et al.
PLANT JOURNAL (2006)
Shoot-derived auxin is essential for early lateral root emergence in Arabidopsis seedlings
RP Bhalerao et al.
PLANT JOURNAL (2002)
Arabidopsis SHY2/IAA3 inhibits auxin-regulated gene expression
Q Tian et al.
PLANT CELL (2002)
AXR2 encodes a member of the Aux/IAA protein family
P Nagpal et al.
PLANT PHYSIOLOGY (2000)