相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。A defined commensal consortium elicits CD8 T cells and anti-cancer immunity
Takeshi Tanoue et al.
NATURE (2019)
A human gut bacterial genome and culture collection for improved metagenomic analyses
Samuel C. Forster et al.
NATURE BIOTECHNOLOGY (2019)
1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses
Yuanqiang Zou et al.
NATURE BIOTECHNOLOGY (2019)
Metagenomic engineering of the mammalian gut microbiome in situ
Carlotta Ronda et al.
NATURE METHODS (2019)
Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
Christopher S. Smillie et al.
CELL HOST & MICROBE (2018)
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
Melanie Tramontano et al.
NATURE MICROBIOLOGY (2018)
Extensive impact of non-antibiotic drugs on human gut bacteria
Lisa Maier et al.
NATURE (2018)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
Fecal Microbiota Transplant From a Rational Stool Donor Improves Hepatic Encephalopathy: A Randomized Clinical Trial
Benjamin H. Mullish et al.
HEPATOLOGY (2017)
Dimethylguanidino valeric acid is a marker of liver fat and predicts diabetes
John F. O'Sullivan et al.
JOURNAL OF CLINICAL INVESTIGATION (2017)
Gut microbiome interactions with drug metabolism, efficacy, and toxicity
Ian D. Wilson et al.
TRANSLATIONAL RESEARCH (2017)
Can you cause inflammatory bowel disease with fecal transplantation? A 31-patient case-series of fecal transplantation using stool from a donor who later developed Crohn's disease
Monika Fischer et al.
GUT MICROBES (2017)
Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation
Marta Wlodarska et al.
CELL HOST & MICROBE (2017)
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology
Maria Carlota Dao et al.
GUT (2016)
RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics
Frederic Jauffrit et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation
Hilary P. Browne et al.
NATURE (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Simone S. Li et al.
SCIENCE (2016)
Helicobacter pylori Diversity and Gastric Cancer Risk
Timothy L. Cover
MBIO (2016)
Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling
Jennifer T. Lau et al.
GENOME MEDICINE (2016)
Culture of previously uncultured members of the human gut microbiota by culturomics
Jean-Christophe Lagier et al.
NATURE MICROBIOLOGY (2016)
Mash: fast genome and metagenome distance estimation using MinHash
Brian D. Ondov et al.
GENOME BIOLOGY (2016)
dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Tal Galili
BIOINFORMATICS (2015)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species
Sharon Greenblum et al.
CELL (2015)
Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial
Paul Moayyedi et al.
GASTROENTEROLOGY (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Engineering the gut rnicrobiota to treat hyperammonemia
Ting-Chin David Shen et al.
JOURNAL OF CLINICAL INVESTIGATION (2015)
Microbial cocktails join fecal transplants in IBD treatment trials
Mark Ratner
NATURE BIOTECHNOLOGY (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Akkermansia muciniphila inversely correlates with the onset of inflammation, altered adipose tissue metabolism and metabolic disorders during obesity in mice
Marc Schneeberger et al.
SCIENTIFIC REPORTS (2015)
Commensal and Pathogenic Escherichia coli Metabolism in the Gut
Tyrrell Conway et al.
MICROBIOLOGY SPECTRUM (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Mining the Human Gut Microbiota for Effector Strains that Shape the Immune System
Philip P. Ahern et al.
IMMUNITY (2014)
Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
Elizabeth A. Rettedal et al.
NATURE COMMUNICATIONS (2014)
Fecal Microbiota Transplantation for Clostridium difficile Infection: Systematic Review and Meta-Analysis
Zain Kassam et al.
AMERICAN JOURNAL OF GASTROENTEROLOGY (2013)
Faecalibacterium prausnitzii and human intestinal health
S. Miquel et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
Koji Atarashi et al.
NATURE (2013)
Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile
Els van Nood et al.
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Stool Microbiome and Metabolome Differences between Colorectal Cancer Patients and Healthy Adults
Tiffany L. Weir et al.
PLOS ONE (2013)
The Long-Term Stability of the Human Gut Microbiota
Jeremiah J. Faith et al.
SCIENCE (2013)
Predicting and Manipulating Cardiac Drug Inactivation by the Human Gut Bacterium Eggerthella lenta
Henry J. Haiser et al.
SCIENCE (2013)
Cultured Representatives of Two Major Phylogroups of Human Colonic Faecalibacterium prausnitzii Can Utilize Pectin, Uronic Acids, and Host-Derived Substrates for Growth
Mireia Lopez-Siles et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
GapFiller: a de novo assembly approach to fill the gap within paired reads
Francesca Nadalin et al.
BMC BIOINFORMATICS (2012)
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes
Michael Y. Galperin et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Relevance of protein fermentation to gut health
Karen Windey et al.
MOLECULAR NUTRITION & FOOD RESEARCH (2012)
Diversity, stability and resilience of the human gut microbiota
Catherine A. Lozupone et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa
Peter A. Bron et al.
NATURE REVIEWS MICROBIOLOGY (2012)
The Most Wanted'' Taxa from the Human Microbiome for Whole Genome Sequencing
Anthony A. Fodor et al.
PLOS ONE (2012)
Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota
Janelle C. Arthur et al.
SCIENCE (2012)
Therapeutic Modulation of Microbiota-Host Metabolic Interactions
Elaine Holmes et al.
SCIENCE TRANSLATIONAL MEDICINE (2012)
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
Andrew L. Goodman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
A Catalog of Reference Genomes from the Human Microbiome
Karen E. Nelson et al.
SCIENCE (2010)
Glycoprofiling Bifidobacterial Consumption of Galacto-Oligosaccharides by Mass Spectrometry Reveals Strain-Specific, Preferential Consumption of Glycans
Mariana Barboza et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease
Janet Jansson et al.
PLOS ONE (2009)
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
Harry Sokol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Fermentation of fructooligosaccharides and inulin by bifidobacteria: a comparative study of pure and fecal cultures
M Rossi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Akkermansia muciniphila gen. nov., sp nov., a human intestinal mucin-degrading bacterium
M Derrien et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Phylogenetics and the cohesion of bacterial genomes
V Daubin et al.
SCIENCE (2003)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
