相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Database resources of the National Center for Biotechnology Information
Richa Agarwala et al.
NUCLEIC ACIDS RESEARCH (2018)
One-third of the plastid genes evolved under positive selection in PACMAD grasses
Anthony Piot et al.
PLANTA (2018)
Gene duplication and dosage effects during the early emergence of C-4 photosynthesis in the grass genus Alloteropsis
Matheus E. Bianconi et al.
JOURNAL OF EXPERIMENTAL BOTANY (2018)
The Hidden Face of Rubisco
Mathieu Pottier et al.
TRENDS IN PLANT SCIENCE (2018)
Photosynthetic Trichomes Contain a Specific Rubisco with a Modified pH-Dependent Activity
Raphaelle Laterre et al.
PLANT PHYSIOLOGY (2017)
Population Structure Shapes Copy Number Variation in Malaria Parasites
Ian H. Cheeseman et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance
Joel W. McGlothlin et al.
CURRENT BIOLOGY (2016)
Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree
Linda Dib et al.
BMC BIOINFORMATICS (2015)
A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity
Susana Magallon et al.
NEW PHYTOLOGIST (2015)
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
Itamar Sela et al.
NUCLEIC ACIDS RESEARCH (2015)
UniProt: a hub for protein information
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2015)
RDP4: Detection and analysis of recombination patterns in virus genomes
Darren P. Martin et al.
VIRUS EVOLUTION (2015)
Evolutionary footprint of coevolving positions in genes
Linda Dib et al.
BIOINFORMATICS (2014)
Gene duplication as a driver of plant morphogenetic evolution
Stefan A. Rensing
CURRENT OPINION IN PLANT BIOLOGY (2014)
Performance of Standard and Stochastic Branch-Site Models for Detecting Positive Selection among Coding Sequences
Ashley Lu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Genetic robustness and functional evolution of gene duplicates
German Plata et al.
NUCLEIC ACIDS RESEARCH (2014)
Unusual Small Subunit That Is Not Expressed in Photosynthetic Cells Alters the Catalytic Properties of Rubisco in Rice
Koichi Morita et al.
PLANT PHYSIOLOGY (2014)
Stability-activity tradeoffs constrain the adaptive evolution of RubisCO
Romain A. Studer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Parallel Recruitment of Multiple Genes into C4 Photosynthesis
Pascal-Antoine Christin et al.
GENOME BIOLOGY AND EVOLUTION (2013)
Molecular methods for genotyping complex copy number polymorphisms
Stuart Cantsilieris et al.
GENOMICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The fate of duplicated genes in a polyploid plant genome
Anne Roulin et al.
PLANT JOURNAL (2013)
Signals of Historical Interlocus Gene Conversion in Human Segmental Duplications
Beth L. Dumont et al.
PLOS ONE (2013)
Codon usage and coevolution of the large and small subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase
Zhi-Yong Pei et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2013)
Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters
Giltae Song et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Crystal Structure of Rice Rubisco and Implications for Activation Induced by Positive Effectors NADPH and 6-Phosphogluconate
Hiroyoshi Matsumura et al.
JOURNAL OF MOLECULAR BIOLOGY (2012)
qgraph: Network Visualizations of Relationships in Psychometric Data
Sacha Epskamp et al.
JOURNAL OF STATISTICAL SOFTWARE (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
phytools: an R package for phylogenetic comparative biology (and other things)
Liam J. Revell
METHODS IN ECOLOGY AND EVOLUTION (2012)
Molecular evolution of rbcL in three gymnosperm families: identifying adaptive and coevolutionary patterns
Lin Sen et al.
BIOLOGY DIRECT (2011)
Changes in Rubisco Kinetics during the Evolution of C4 Photosynthesis in Flaveria (Asteraceae) Are Associated with Positive Selection on Genes Encoding the Enzyme
Maxim V. Kapralov et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Convergent Cenozoic CO2 history
David J. Beerling et al.
NATURE GEOSCIENCE (2011)
Crystal structure of a chaperone-bound assembly intermediate of form I Rubisco
Andreas Bracher et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
OMA 2011: orthology inference among 1000 complete genomes
Adrian M. Altenhoff et al.
NUCLEIC ACIDS RESEARCH (2011)
The Power of the Methods for Detecting Interlocus Gene Conversion
Sayaka P. Mansai et al.
GENETICS (2010)
Functional Hybrid Rubisco Enzymes with Plant Small Subunits and Algal Large Subunits ENGINEERED rbcS cDNA FOR EXPRESSION IN CHLAMYDOMONAS
Todor Genkov et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
The evolution of gene duplications: classifying and distinguishing between models
Hideki Innan et al.
NATURE REVIEWS GENETICS (2010)
Structural and Functional Roles of Coevolved Sites in Proteins
Saikat Chakrabarti et al.
PLOS ONE (2010)
The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science
Erika J. Edwards et al.
SCIENCE (2010)
Highly Conserved Small Subunit Residues Influence Rubisco Large Subunit Catalysis
Todor Genkov et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Atmospheric carbon dioxide through the Eocene-Oligocene climate transition
Paul N. Pearson et al.
NATURE (2009)
Gene duplication and evolutionary novelty in plants
Lex E. Flagel et al.
NEW PHYTOLOGIST (2009)
The evolutionary rate of duplicated genes under concerted evolution
Shuhei Mano et al.
GENETICS (2008)
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
Romain A. Studer et al.
GENOME RESEARCH (2008)
The biochemistry of Rubisco in Flaveria
David S. Kubien et al.
JOURNAL OF EXPERIMENTAL BOTANY (2008)
Evolutionary Switch and Genetic Convergence on rbcL following the Evolution of C4 Photosynthesis
Pascal-Antoine Christin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Diverse Expression Patterns of Subgroups of the rif Multigene Family during Plasmodium falciparum Gametocytogenesis
Michaela Petter et al.
PLOS ONE (2008)
Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy
Ran Kafri et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Catalysis and regulation in Rubisco
Inger Andersson
JOURNAL OF EXPERIMENTAL BOTANY (2008)
Widespread positive selection in the photosynthetic Rubisco enzyme
Maxim V. Kapralov et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Phylogenetic and molecular analysis of the ribulose-1,5-bisphosphate carboxylase small subunit gene family in banana
Skye Thomas-Hall et al.
JOURNAL OF EXPERIMENTAL BOTANY (2007)
Cysteines 449 and 459 modulate the reduction-oxidation conformational changes of ribulose 1.5-bisphosphate carboxylase/oxygenase and the translocation of the enzyme to membranes during stress
J Marín-Navarro et al.
PLANT CELL AND ENVIRONMENT (2006)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
The FoldX web server: an online force field
J Schymkowitz et al.
NUCLEIC ACIDS RESEARCH (2005)
The evolutionary dynamics of plant duplicate genes
RC Moore et al.
CURRENT OPINION IN PLANT BIOLOGY (2005)
Robustness, evolvability, and neutrality
A Wagner
FEBS LETTERS (2005)
HyPhy: hypothesis testing using phylogenies
SLK Pond et al.
BIOINFORMATICS (2005)
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon et al.
SYSTEMATIC BIOLOGY (2003)
Dosage sensitivity and the evolution of gene families in yeast
B Papp et al.
NATURE (2003)
Role of the small subunit in ribulose-1,5-bisphosphate carboxylase/oxygenase
RJ Spreitzer
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2003)
Gene duplication, neofunctionalization, and the evolution of C4 photosynthesis
RK Monson
INTERNATIONAL JOURNAL OF PLANT SCIENCES (2003)
The degradation of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase into the 44-kDa fragment in the lysates of chloroplasts incubated in darkness
N Kokubun et al.
PLANT AND CELL PHYSIOLOGY (2002)
Differential expression of members of the annexin multigene family in Arabidopsis
GB Clark et al.
PLANT PHYSIOLOGY (2001)
High resolution resonance enhanced two photon ionization spectroscopy of RbCs in a cold molecular beam
Y Yoon et al.
JOURNAL OF CHEMICAL PHYSICS (2001)
Characterization of the rbcS multigene family in wheat:: subfamily classification, determination of chromosomal location and evolutionary analysis
T Sasanuma
MOLECULAR GENETICS AND GENOMICS (2001)
Effects of low atmospheric CO(2) on plants: more than a thing of the past
RF Sage et al.
TRENDS IN PLANT SCIENCE (2001)