4.7 Article

Duplication history and molecular evolution of the rbcS multigene family in angiosperms

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Database resources of the National Center for Biotechnology Information

Richa Agarwala et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Plant Sciences

The Hidden Face of Rubisco

Mathieu Pottier et al.

TRENDS IN PLANT SCIENCE (2018)

Article Plant Sciences

Photosynthetic Trichomes Contain a Specific Rubisco with a Modified pH-Dependent Activity

Raphaelle Laterre et al.

PLANT PHYSIOLOGY (2017)

Article Biochemistry & Molecular Biology

Population Structure Shapes Copy Number Variation in Malaria Parasites

Ian H. Cheeseman et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance

Joel W. McGlothlin et al.

CURRENT BIOLOGY (2016)

Article Biochemistry & Molecular Biology

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

Itamar Sela et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Virology

RDP4: Detection and analysis of recombination patterns in virus genomes

Darren P. Martin et al.

VIRUS EVOLUTION (2015)

Article Biochemical Research Methods

Evolutionary footprint of coevolving positions in genes

Linda Dib et al.

BIOINFORMATICS (2014)

Review Plant Sciences

Gene duplication as a driver of plant morphogenetic evolution

Stefan A. Rensing

CURRENT OPINION IN PLANT BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Performance of Standard and Stochastic Branch-Site Models for Detecting Positive Selection among Coding Sequences

Ashley Lu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Genetic robustness and functional evolution of gene duplicates

German Plata et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Stability-activity tradeoffs constrain the adaptive evolution of RubisCO

Romain A. Studer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Evolutionary Biology

Parallel Recruitment of Multiple Genes into C4 Photosynthesis

Pascal-Antoine Christin et al.

GENOME BIOLOGY AND EVOLUTION (2013)

Review Biotechnology & Applied Microbiology

Molecular methods for genotyping complex copy number polymorphisms

Stuart Cantsilieris et al.

GENOMICS (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Plant Sciences

The fate of duplicated genes in a polyploid plant genome

Anne Roulin et al.

PLANT JOURNAL (2013)

Article Multidisciplinary Sciences

Signals of Historical Interlocus Gene Conversion in Human Segmental Duplications

Beth L. Dumont et al.

PLOS ONE (2013)

Article Plant Sciences

Codon usage and coevolution of the large and small subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase

Zhi-Yong Pei et al.

JOURNAL OF SYSTEMATICS AND EVOLUTION (2013)

Article Evolutionary Biology

Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters

Giltae Song et al.

GENOME BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Crystal Structure of Rice Rubisco and Implications for Activation Induced by Positive Effectors NADPH and 6-Phosphogluconate

Hiroyoshi Matsumura et al.

JOURNAL OF MOLECULAR BIOLOGY (2012)

Article Computer Science, Interdisciplinary Applications

qgraph: Network Visualizations of Relationships in Psychometric Data

Sacha Epskamp et al.

JOURNAL OF STATISTICAL SOFTWARE (2012)

Letter Biochemical Research Methods

jModelTest 2: more models, new heuristics and parallel computing

Diego Darriba et al.

NATURE METHODS (2012)

Article Ecology

phytools: an R package for phylogenetic comparative biology (and other things)

Liam J. Revell

METHODS IN ECOLOGY AND EVOLUTION (2012)

Editorial Material Geosciences, Multidisciplinary

Convergent Cenozoic CO2 history

David J. Beerling et al.

NATURE GEOSCIENCE (2011)

Article Biochemistry & Molecular Biology

Crystal structure of a chaperone-bound assembly intermediate of form I Rubisco

Andreas Bracher et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

OMA 2011: orthology inference among 1000 complete genomes

Adrian M. Altenhoff et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Genetics & Heredity

The Power of the Methods for Detecting Interlocus Gene Conversion

Sayaka P. Mansai et al.

GENETICS (2010)

Review Genetics & Heredity

The evolution of gene duplications: classifying and distinguishing between models

Hideki Innan et al.

NATURE REVIEWS GENETICS (2010)

Article Multidisciplinary Sciences

Structural and Functional Roles of Coevolved Sites in Proteins

Saikat Chakrabarti et al.

PLOS ONE (2010)

Review Multidisciplinary Sciences

The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science

Erika J. Edwards et al.

SCIENCE (2010)

Article Biochemistry & Molecular Biology

Highly Conserved Small Subunit Residues Influence Rubisco Large Subunit Catalysis

Todor Genkov et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Multidisciplinary Sciences

Atmospheric carbon dioxide through the Eocene-Oligocene climate transition

Paul N. Pearson et al.

NATURE (2009)

Review Plant Sciences

Gene duplication and evolutionary novelty in plants

Lex E. Flagel et al.

NEW PHYTOLOGIST (2009)

Article Genetics & Heredity

The evolutionary rate of duplicated genes under concerted evolution

Shuhei Mano et al.

GENETICS (2008)

Article Biochemistry & Molecular Biology

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

Romain A. Studer et al.

GENOME RESEARCH (2008)

Article Plant Sciences

The biochemistry of Rubisco in Flaveria

David S. Kubien et al.

JOURNAL OF EXPERIMENTAL BOTANY (2008)

Article Biochemistry & Molecular Biology

Evolutionary Switch and Genetic Convergence on rbcL following the Evolution of C4 Photosynthesis

Pascal-Antoine Christin et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Multidisciplinary Sciences

Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy

Ran Kafri et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Plant Sciences

Catalysis and regulation in Rubisco

Inger Andersson

JOURNAL OF EXPERIMENTAL BOTANY (2008)

Article Evolutionary Biology

Widespread positive selection in the photosynthetic Rubisco enzyme

Maxim V. Kapralov et al.

BMC EVOLUTIONARY BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

JZ Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

The FoldX web server: an online force field

J Schymkowitz et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Plant Sciences

The evolutionary dynamics of plant duplicate genes

RC Moore et al.

CURRENT OPINION IN PLANT BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Robustness, evolvability, and neutrality

A Wagner

FEBS LETTERS (2005)

Article Biochemical Research Methods

HyPhy: hypothesis testing using phylogenies

SLK Pond et al.

BIOINFORMATICS (2005)

Review Plant Sciences

The evolution of C4 photosynthesis

RF Sage

NEW PHYTOLOGIST (2004)

Article Multidisciplinary Sciences

Dosage sensitivity and the evolution of gene families in yeast

B Papp et al.

NATURE (2003)

Review Biochemistry & Molecular Biology

Role of the small subunit in ribulose-1,5-bisphosphate carboxylase/oxygenase

RJ Spreitzer

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2003)

Article Plant Sciences

Gene duplication, neofunctionalization, and the evolution of C4 photosynthesis

RK Monson

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2003)

Review Plant Sciences

Effects of low atmospheric CO(2) on plants: more than a thing of the past

RF Sage et al.

TRENDS IN PLANT SCIENCE (2001)