4.7 Article

An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Identification of regulatory elements from nascent transcription using dREG

Zhong Wang et al.

GENOME RESEARCH (2019)

Article Biochemistry & Molecular Biology

The Pfam protein families database in 2019

Sara El-Gebali et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

A fast and tuneable auxin-inducible degron for depletion of target proteins in budding yeast

Gonzalo I. Mendoza-Ochoa et al.

Article Biochemistry & Molecular Biology

Universal correction of enzymatic sequence bias reveals molecular signatures of protein/DNA interactions

Andre L. Martins et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

The dTAG system for immediate and target-specific protein degradation

Behnam Nabet et al.

NATURE CHEMICAL BIOLOGY (2018)

Article Biochemistry & Molecular Biology

SWISS-MODEL: homology modelling of protein structures and complexes

Andrew Waterhouse et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle

Clarissa Scholes et al.

CELL SYSTEMS (2017)

Article Biochemistry & Molecular Biology

Cofactor squelching: Artifact or fact?

Soren Fisker Schmidt et al.

BIOESSAYS (2016)

Article Biochemistry & Molecular Biology

Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome

Christopher M. Vockley et al.

Article Developmental Biology

Mechanisms of auxin signaling

Meirav Lavy et al.

DEVELOPMENT (2016)

Article Biochemical Research Methods

Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)

Dig Bijay Mahat et al.

NATURE PROTOCOLS (2016)

Article Biochemistry & Molecular Biology

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Maxim V. Kuleshov et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Plant Sciences

A Review of Auxin Response Factors (ARFs) in Plants

Si-Bei Li et al.

FRONTIERS IN PLANT SCIENCE (2016)

Article Biochemistry & Molecular Biology

The MEME Suite

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters

Swneke D. Bailey et al.

NATURE COMMUNICATIONS (2015)

Article Biochemical Research Methods

Precise gene deletion and replacement using the CRISPR/Cas9 system in human cells

Qiupeng Zheng et al.

BIOTECHNIQUES (2014)

Article Biochemistry & Molecular Biology

Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions

Stephanie A. Morris et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)

Article Multidisciplinary Sciences

Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression

David A. Korasick et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Structural basis for oligomerization of auxin transcriptional regulators

Max H. Nanao et al.

NATURE COMMUNICATIONS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Enhancer transcripts mark active estrogen receptor binding sites

Nasun Hah et al.

GENOME RESEARCH (2013)

Article Biochemical Research Methods

Genome engineering using the CRISPR-Cas9 system

F. Ann Ran et al.

NATURE PROTOCOLS (2013)

Article Biochemistry & Molecular Biology

Modulation of gene expression via overlapping binding sites exerted by ZNF143, Notch1 and THAP11

Richard Patryk Ngondo-Mbongo et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing

Hojoong Kwak et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

RNA-Guided Human Genome Engineering via Cas9

Prashant Mali et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

An expanded tool kit for the auxin-inducible degron system in budding yeast

Magdalena Morawska et al.

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin

Luz Irina A. Calderon Villalobos et al.

NATURE CHEMICAL BIOLOGY (2012)

Review Genetics & Heredity

Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

Karen Adelman et al.

NATURE REVIEWS GENETICS (2012)

Article Toxicology

High-Resolution Genome-wide Mapping of AHR and ARNT Binding Sites by ChIP-Seq

Raymond Lo et al.

TOXICOLOGICAL SCIENCES (2012)

Article Biochemical Research Methods

BigWig and BigBed: enabling browsing of large distributed datasets

W. J. Kent et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Plant Sciences

Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.)

ChenJia Shen et al.

JOURNAL OF EXPERIMENTAL BOTANY (2010)

Article Multidisciplinary Sciences

Widespread transcription at neuronal activity-regulated enhancers

Tae-Kyung Kim et al.

NATURE (2010)

Article Cell Biology

Auxin Perception-Structural Insights

Luz Irina Calderon-Villalobos et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)

Article Genetics & Heredity

Chromatin Landscape Dictates HSF Binding to Target DNA Elements

Michael J. Guertin et al.

PLOS GENETICS (2010)

Review Genetics & Heredity

Mechanism of Auxin-Regulated Gene Expression in Plants

Elisabeth J. Chapman et al.

ANNUAL REVIEW OF GENETICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Spt6 enhances the elongation rate of RNA polymerase II in vivo

M. Behfar Ardehali et al.

EMBO JOURNAL (2009)

Article Biochemistry & Molecular Biology

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

Timothy E. Reddy et al.

GENOME RESEARCH (2009)

Review Multidisciplinary Sciences

Defining mechanisms that regulate RNA polymerase II transcription in vivo

Nicholas J. Fuda et al.

NATURE (2009)

Article Biochemical Research Methods

An auxin-based degron system for the rapid depletion of proteins in nonplant cells

Kohei Nishimura et al.

NATURE METHODS (2009)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Mediator-dependent recruitment of TFIIH modules in preinitiation complex

Cyril Esnault et al.

MOLECULAR CELL (2008)

Review Plant Sciences

Auxin response factors

Toni J. Guilfoyle et al.

CURRENT OPINION IN PLANT BIOLOGY (2007)

Article Multidisciplinary Sciences

Mechanism of auxin perception by the TIR1 ubiquitin ligase

Xu Tan et al.

NATURE (2007)

Article Genetics & Heredity

Genome-wide analysis of estrogen receptor binding sites

Jason S. Carroll et al.

NATURE GENETICS (2006)

Article Biochemistry & Molecular Biology

Drosophila Paf1 modulates chromatin structure at actively transcribed genes

K Adelman et al.

MOLECULAR AND CELLULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo

CK Govind et al.

MOLECULAR AND CELLULAR BIOLOGY (2005)

Article Multidisciplinary Sciences

The F-box protein TIR1 is an auxin receptor

N Dharmasiri et al.

NATURE (2005)

Article Multidisciplinary Sciences

The Arabidopsis F-box protein TIR1 is an auxin receptor

S Kepinski et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

Aux/IAA proteins contain a potent transcriptional repression domain

SB Tiwari et al.

PLANT CELL (2004)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

Auxin action in a cell-free system

N Dharmasiri et al.

CURRENT BIOLOGY (2003)

Article Multidisciplinary Sciences

Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins

WM Gray et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

Functional connections between mediator components and general transcription factors of Saccharomyces cerevisiae

H Sakurai et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)