4.7 Article

Lignocellulose degradation in isopods: new insights into the adaptation to terrestrial life

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biotechnology & Applied Microbiology

Multiplicity of enzymatic functions in the CAZy AA3 family

Leander Suetzl et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

Article Genetics & Heredity

cDNA sequences of GHF9 endo-β-1,4-glucanases in terrestrial Crustacea

Michael Gray et al.

Article Biochemistry & Molecular Biology

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes

Steven Weaver et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Multidisciplinary Sciences

An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion

Federico Sabbadin et al.

NATURE COMMUNICATIONS (2018)

Review Microbiology

The hologenome concept of evolution after 10 years

Eugene Rosenberg et al.

MICROBIOME (2018)

Article Multidisciplinary Sciences

Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans

Katrin Besser et al.

NATURE COMMUNICATIONS (2018)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Review Microbiology

Lignin degradation: microorganisms, enzymes involved, genomes analysis and evolution

Grzegorz Janusz et al.

FEMS MICROBIOLOGY REVIEWS (2017)

Article Biochemical Research Methods

Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function

P. K. Busk et al.

BMC BIOINFORMATICS (2017)

Article Biochemistry & Molecular Biology

The Pfam protein families database: towards a more sustainable future

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

Daniel H. Huson et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Biochemical Research Methods

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simao et al.

BIOINFORMATICS (2015)

Review Biochemistry & Molecular Biology

Lignocellulose degradation mechanisms across the Tree of Life

Simon M. Cragg et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Gene-Wide Identification of Episodic Selection

Ben Murrell et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

Tauno Metsalu et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

Fast and sensitive protein alignment using DIAMOND

Benjamin Buchfink et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

Panagiotis Ioannidis et al.

BMC GENOMICS (2014)

Review Microbiology

Symbiotic digestion of lignocellulose in termite guts

Andreas Brune

NATURE REVIEWS MICROBIOLOGY (2014)

Review Microbiology

Plant-Polysaccharide-Degrading Enzymes from Basidiomycetes

Johanna Rytioja et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2014)

Article Biochemistry & Molecular Biology

The carbohydrate-active enzymes database (CAZy) in 2013

Vincent Lombard et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Biotechnology & Applied Microbiology

Lignocellulose-degrading enzymes from termites and their symbiotic microbiota

Jinfeng Ni et al.

BIOTECHNOLOGY ADVANCES (2013)

Article Biotechnology & Applied Microbiology

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

Zhongtao Zhao et al.

BMC GENOMICS (2013)

Article Ecology

The origin of terrestrial isopods (Crustacea: Isopoda: Oniscidea)

Pierre Broly et al.

EVOLUTIONARY ECOLOGY (2013)

Article Biochemistry & Molecular Biology

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

Ben Murrell et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

Jaina Mistry et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance

Marcelo Kern et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

Expansion of the silkworm GMC oxidoreductase genes is associated with immunity

Wei Sun et al.

INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Yanbin Yin et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee

Ricardo Acuna et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Dimitrios Floudas et al.

SCIENCE (2012)

Article Multidisciplinary Sciences

The Ecoresponsive Genome of Daphnia pulex

John K. Colbourne et al.

SCIENCE (2011)

Article Physiology

Endogenous origin of endo-β-1,4-glucanase in common woodlouse Porcellio scaber (Crustacea, Isopoda)

Rok Kostanjsek et al.

JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMS AND ENVIRONMENTAL PHYSIOLOGY (2010)

Article Multidisciplinary Sciences

Molecular insight into lignocellulose digestion by a marine isopod in the absence of gut microbes

Andrew J. King et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

Etienne G. J. Danchin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Evolutionary Biology

Expansion and evolution of insect GMC oxidoreductases

Kaori Iida et al.

BMC EVOLUTIONARY BIOLOGY (2007)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

CAFE: a computational tool for the study of gene family evolution

T De Bie et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Not so different after all: A comparison of methods for detecting amino acid sites under selection

SLK Pond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Ancient origin of glycosyl hydrolase family 9 cellulase genes

A Davison et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biotechnology & Applied Microbiology

Anaerobic bacteria in the gut of terrestrial isopod crustacean Porcellio scaber

R Kostanjsek et al.

FOLIA MICROBIOLOGICA (2004)

Article Biology

Evidence for the presence of a cellulase gene in the last common ancestor of bilaterian animals

N Lo et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)

Article Marine & Freshwater Biology

Cellulose digestion and phenol oxidation in coastal isopods (Crustacea : Isopoda)

M Zimmer et al.

MARINE BIOLOGY (2002)