4.7 Article

Systematic identification of intergenic long-noncoding RNAs in mouse retinas using full-length isoform sequencing

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases

Zhenyu Bao et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

NONCODEV5: a comprehensive annotation database for long non-coding RNAs

ShuangSang Fang et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Where You Cut Matters: A Dissection and Analysis Guide for the Spatial Orientation of the Mouse Retina from Ocular Landmarks

Katelyn B. Sondereker et al.

JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2018)

Review Genetics & Heredity

Precise long non-coding RNA modulation in visual maintenance and impairment

Peixing Wan et al.

JOURNAL OF MEDICAL GENETICS (2017)

Review Genetics & Heredity

Comparative transcriptomics in human and mouse

Alessandra Breschi et al.

NATURE REVIEWS GENETICS (2017)

Article Developmental Biology

Cell type-specific effects of p27KIP1 loss on retinal development

Mariko Ogawa et al.

NEURAL DEVELOPMENT (2017)

Article Ophthalmology

The Long Noncoding RNA Landscape of the Mouse Eye

Weiwei Chen et al.

INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE (2017)

Article Ophthalmology

Regulation of Noncoding Transcriptome in Developing Photoreceptors by Rod Differentiation Factor NRL

Lina Zelinger et al.

INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE (2017)

Article Biochemistry & Molecular Biology

The Pfam protein families database: towards a more sustainable future

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biotechnology & Applied Microbiology

Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Hangxing Ren et al.

BMC GENOMICS (2016)

Article Medicine, Research & Experimental

Long non-coding RNA MALAT1 regulates retinal neurodegeneration through CREB signaling

Jin Yao et al.

EMBO MOLECULAR MEDICINE (2016)

Article Biology

Identification and analysis of mouse non-coding RNA using transcriptome data

Yuhui Zhao et al.

SCIENCE CHINA-LIFE SCIENCES (2016)

Article Multidisciplinary Sciences

A network comprising short and long noncoding RNAs and RNA helicase controls mouse retina architecture

Jacek Krol et al.

NATURE COMMUNICATIONS (2015)

Article Biochemical Research Methods

LoRDEC: accurate and efficient long read error correction

Leena Salmela et al.

BIOINFORMATICS (2014)

Review Genetics & Heredity

Long non-coding RNAs: new players in cell differentiation and development

Alessandro Fatica et al.

NATURE REVIEWS GENETICS (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen et al.

BMC BIOINFORMATICS (2013)

Review Biochemistry & Molecular Biology

lincRNAs: Genomics, Evolution, and Mechanisms

Igor Ulitsky et al.

Review Biochemistry & Molecular Biology

Intrinsic control of mammalian retinogenesis

Mengqing Xiang

CELLULAR AND MOLECULAR LIFE SCIENCES (2013)

Article Biochemistry & Molecular Biology

Transcription Factors SOX4 and SOX11 Function Redundantly to Regulate the Development of Mouse Retinal Ganglion Cells

Ying Jiang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Article Biochemistry & Molecular Biology

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

Liguo Wang et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Biochemistry & Molecular Biology

Genome Regulation by Long Noncoding RNAs

John L. Rinn et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 81 (2012)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

Andrea Pauli et al.

GENOME RESEARCH (2012)

Article Biochemical Research Methods

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell et al.

NATURE PROTOCOLS (2012)

Review Neurosciences

The Neuronal Organization of the Retina

Richard H. Masland

NEURON (2012)

Review Neurosciences

Cell fate determination in the vertebrate retina

Erin A. Bassett et al.

TRENDS IN NEUROSCIENCES (2012)

Article Developmental Biology

The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity

Nicole A. Rapicavoli et al.

NEURAL DEVELOPMENT (2011)

Article Multidisciplinary Sciences

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek et al.

PLOS ONE (2011)

Article Biochemical Research Methods

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

Likun Wang et al.

BIOINFORMATICS (2010)

Article Developmental Biology

The long noncoding RNA RNCR2 directs mouse retinal cell specification

Nicole A. Rapicavoli et al.

BMC DEVELOPMENTAL BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Multidisciplinary Sciences

Gene regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2

Xiuqian Mu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Cell Biology

Molecular regulation of visual system development: more than meets the eye

Takayuki Harada et al.

GENES & DEVELOPMENT (2007)

Article Biochemical Research Methods

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

TD Wu et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

The noncoding RNA Taurine upregulated gene 1 is required for differentiation of the murine retina

TL Young et al.

CURRENT BIOLOGY (2005)

Article Developmental Biology

Math5 determines the competence state of retinal ganglion cell progenitors

ZY Yang et al.

DEVELOPMENTAL BIOLOGY (2003)

Review Neurosciences

Vertebrate neural cell-fate determination: Lessons from the retina

FJ Livesey et al.

NATURE REVIEWS NEUROSCIENCE (2001)

Article Cell Biology

Requirement for math5 in the development of retinal ganglion cells

SW Wang et al.

GENES & DEVELOPMENT (2001)