相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。WashU Epigenome Browser update 2019
Daofeng Li et al.
NUCLEIC ACIDS RESEARCH (2019)
hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data
Caleb A. Lareau et al.
NATURE METHODS (2018)
Trac-looping measures genome structure and chromatin accessibility
Binbin Lai et al.
NATURE METHODS (2018)
ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis
Guipeng Li et al.
NUCLEIC ACIDS RESEARCH (2017)
Comparison of computational methods for Hi-C data analysis
Mattia Forcato et al.
NATURE METHODS (2017)
GOTHiC, a probabilistic model to resolve complex biases and to identify real interactions in Hi-C data
Borbala Mifsud et al.
PLOS ONE (2017)
YY1 Is a Structural Regulator of Enhancer-Promoter Loops
Abraham S. Weintraub et al.
CELL (2017)
Cohesin Loss Eliminates All Loop Domains
Suhas S. P. Rao et al.
CELL (2017)
HiChIP: efficient and sensitive analysis of protein-directed genome architecture
Maxwell R. Mumbach et al.
NATURE METHODS (2016)
Mapping the 3D genome: Aiming for consilience
Job Dekker
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
Mango: a bias-correcting ChIA-PET analysis pipeline
Douglas H. Phanstiel et al.
BIOINFORMATICS (2015)
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data
Aaron T. L. Lun et al.
BMC BIOINFORMATICS (2015)
CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
Zhonghui Tang et al.
CELL (2015)
Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes
Xiao-Tao Wang et al.
NUCLEIC ACIDS RESEARCH (2015)
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements
Yih-Chii Hwang et al.
BIOINFORMATICS (2015)
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant et al.
GENOME BIOLOGY (2015)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
Jill M. Dowen et al.
CELL (2014)
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
Ferhat Ay et al.
GENOME RESEARCH (2014)
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions
Jonas Paulsen et al.
NUCLEIC ACIDS RESEARCH (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization
Iouri Chepelev et al.
CELL RESEARCH (2012)
CTCF-mediated functional chromatin interactome in pluripotent cells
Lusy Handoko et al.
NATURE GENETICS (2011)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Mediator and cohesin connect gene expression and chromatin architecture
Michael H. Kagey et al.
NATURE (2010)
An oestrogen-receptor-α-bound human chromatin interactome
Melissa J. Fullwood et al.
NATURE (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus
Erik Splinter et al.
GENES & DEVELOPMENT (2006)