相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Assembly of a pan-genome from deep sequencing of 910 humans of African descent
Rachel M. Sherman et al.
NATURE GENETICS (2019)
Limits of long-term selection against Neandertal introgression
Martin Petr et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Ancient Genomics of Modern Humans: The First Decade
Pontus Skoglund et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 19 (2018)
Something old, something borrowed: admixture and adaptation in human evolution
Michael Dannemann et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2018)
The evolutionary history of human populations in Europe
Iosif Lazaridis
CURRENT OPINION IN GENETICS & DEVELOPMENT (2018)
Ancient human parallel lineages within North America contributed to a coastal expansion
C. L. Scheib et al.
SCIENCE (2018)
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
Marieke van de Loosdrecht et al.
SCIENCE (2018)
Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation
Torsten Gunther et al.
PLOS BIOLOGY (2018)
Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences
Cesare de Filippo et al.
BMC BIOLOGY (2018)
Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing
Roger Ros-Freixedes et al.
GENETICS SELECTION EVOLUTION (2018)
Inferring Heterozygosity from Ancient and Low Coverage Genomes
Athanasios Kousathanas et al.
GENETICS (2017)
Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference
Aaron B. A. Shafer et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
Inferring Heterozygosity from Ancient and Low Coverage Genomes
Athanasios Kousathanas et al.
GENETICS (2017)
Genome graphs and the evolution of genome inference
Benedict Paten et al.
GENOME RESEARCH (2017)
AntCaller: an accurate variant caller incorporating ancient DNA damage
Boyan Zhou et al.
MOLECULAR GENETICS AND GENOMICS (2017)
Tracing the peopling of the world through genomics
Rasmus Nielsen et al.
NATURE (2017)
Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago
Carina M. Sehlebusch et al.
SCIENCE (2017)
A high-coverage Neandertal genome from Vindija Cave in Croatia
Kay Pruefer et al.
SCIENCE (2017)
The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods
Rui Martiniano et al.
PLOS GENETICS (2017)
A new genus of horse from Pleistocene North America
Peter D. Heintzman et al.
ELIFE (2017)
Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions
Steven H. Wu et al.
BIOINFORMATICS (2017)
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Shyam Gopalakrishnan et al.
BMC GENOMICS (2017)
Genes mirror migrations and cultures in prehistoric Europe - a population genomic perspective
Torsten Guenther et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2016)
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
Swapan Mallick et al.
NATURE (2016)
Ancient DNA and human history
Montgomery Slatkin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A time transect of exomes from a Native American population before and after European contact
John Lindo et al.
NATURE COMMUNICATIONS (2016)
Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans
Fernando Racimo et al.
PLOS GENETICS (2016)
Genetic evidence for two founding populations of the Americas
Pontus Skoglund et al.
NATURE (2015)
Genome-wide patterns of selection in 230 ancient Eurasians
Iain Mathieson et al.
NATURE (2015)
Massive migration from the steppe was a source for Indo-European languages in Europe
Wolfgang Haak et al.
NATURE (2015)
A global reference for human genetic variation
David M. Altshuler et al.
NATURE (2015)
Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques
Torsten Gunther et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Upper Palaeolithic genomes reveal deep roots of modern Eurasians
Eppie R. Jones et al.
NATURE COMMUNICATIONS (2015)
Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data
Debora Y. C. Brandt et al.
G3-GENES GENOMES GENETICS (2015)
The complete genome sequence of a Neanderthal from the Altai Mountains
Kay Pruefer et al.
NATURE (2014)
Ancient human genomes suggest three ancestral populations for present-day Europeans
Iosif Lazaridis et al.
NATURE (2014)
Genome sequence of a 45,000-year-old modern human from western Siberia
Qiaomei Fu et al.
NATURE (2014)
A Paleogenomic Perspective on Evolution and Gene Function: New Insights from Ancient DNA
B. Shapiro et al.
SCIENCE (2014)
Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers
Pontus Skoglund et al.
SCIENCE (2014)
Genome flux and stasis in a five millennium transect of European prehistory
Cristina Gamba et al.
NATURE COMMUNICATIONS (2014)
Quantifying single nucleotide variant detection sensitivity in exome sequencing
Alison M. Meynert et al.
BMC BIOINFORMATICS (2013)
Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data
Thorfinn Sand Korneliussen et al.
BMC BIOINFORMATICS (2013)
An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data
Yi Wang et al.
GENOME RESEARCH (2013)
Assessing the Effect of Sequencing Depth and Sample Size in Population Genetics Inferences
Matteo Fumagalli
PLOS ONE (2013)
Characterizing and measuring bias in sequence data
Michael G. Ross et al.
GENOME BIOLOGY (2013)
Improving ancient DNA read mapping against modern reference genomes
Mikkel Schubert et al.
BMC GENOMICS (2012)
Biases and Errors on Allele Frequency Estimation and Disease Association Tests of Next-Generation Sequencing of Pooled Samples
Xiaowei Chen et al.
GENETIC EPIDEMIOLOGY (2012)
Ancient Admixture in Human History
Nick Patterson et al.
GENETICS (2012)
The allele distribution in next-generation sequencing data sets is accurately described as the result of a stochastic branching process
Verena Heinrich et al.
NUCLEIC ACIDS RESEARCH (2012)
A High-Coverage Genome Sequence from an Archaic Denisovan Individual
Matthias Meyer et al.
SCIENCE (2012)
Assessing the Accuracy and Power of Population Genetic Inference from Low-Pass Next-Generation Sequencing Data
Jacob E. Crawford et al.
Frontiers in Genetics (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Genotype and SNP calling from next-generation sequencing data
Rasmus Nielsen et al.
NATURE REVIEWS GENETICS (2011)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Ascertainment Biases in SNP Chips Affect Measures of Population Divergence
Anders Albrechtsen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Tackling the widespread and critical impact of batch effects in high-throughput data
Jeffrey T. Leek et al.
NATURE REVIEWS GENETICS (2010)
A Draft Sequence of the Neandertal Genome
Richard E. Green et al.
SCIENCE (2010)
Computational challenges in the analysis of ancient DNA
Kay Pruefer et al.
GENOME BIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Fast model-based estimation of ancestry in unrelated individuals
David H. Alexander et al.
GENOME RESEARCH (2009)
Simultaneous alignment of short reads against multiple genomes
Korbinian Schneeberger et al.
GENOME BIOLOGY (2009)
A large genome center's improvements to the Illumina sequencing system
Michael A. Quail et al.
NATURE METHODS (2008)
Patterns of damage in genomic DNA sequences from a Neandertal
Adrian W. Briggs et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Novel high-resolution characterization of ancient DNA reveals C>U-type base modification events as the sole cause of post mortem miscoding lesions
Paul Brotherton et al.
NUCLEIC ACIDS RESEARCH (2007)
DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
M Hofreiter et al.
NUCLEIC ACIDS RESEARCH (2001)