相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Uncovering and resolving challenges of quantitative modeling in a simplified community of interacting cells
Samuel F. M. Hart et al.
PLOS BIOLOGY (2019)
Evolthon: A community endeavor to evolve lab evolution
Sivan Kaminski Strauss et al.
PLOS BIOLOGY (2019)
Disentangling strictly self-serving mutations from win-win mutations in a mutualistic microbial community
Samuel Frederick Mock Hart et al.
ELIFE (2019)
Understanding microbial community dynamics to improve optimal microbiome selection
Robyn J. Wright et al.
MICROBIOME (2019)
Microbial community design: methods, applications, and opportunities
Alexander Eng et al.
CURRENT OPINION IN BIOTECHNOLOGY (2019)
High-throughput quantification of microbial birth and death dynamics using fluorescence microscopy
Samuel F. M. Hart et al.
QUANTITATIVE BIOLOGY (2019)
Multi-stability and the origin of microbial community types
Didier Gonze et al.
ISME JOURNAL (2017)
The evolution of the host microbiome as an ecosystem on a leash
Kevin R. Foster et al.
NATURE (2017)
Towards a mechanistic foundation of evolutionary theory
Michael Doebeli et al.
eLife (2017)
Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions
Babak Momeni et al.
ELIFE (2017)
Public goods and metabolic strategies
Herwig Bachmann et al.
CURRENT OPINION IN MICROBIOLOGY (2016)
Engineering microbial consortia for controllable outputs
Stephen R. Lindemann et al.
ISME JOURNAL (2016)
Challenges in microbial ecology: building predictive understanding of community function and dynamics
Stefanie Widder et al.
ISME JOURNAL (2016)
Local fitness landscape of the green fluorescent protein
Karen S. Sarkisyan et al.
NATURE (2016)
High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations
Celia Payen et al.
PLOS GENETICS (2016)
Evolvability as a Function of Purifying Selection in TEM-1 β-Lactamase
Michael A. Stiffler et al.
CELL (2015)
Cell-Size Control and Homeostasis in Bacteria
Sattar Taheri-Araghi et al.
CURRENT BIOLOGY (2015)
Levels and limits in artificial selection of communities
Manuel Blouin et al.
ECOLOGY LETTERS (2015)
Quantitative evolutionary dynamics using high-resolution lineage tracking
Sasha F. Levy et al.
NATURE (2015)
Engineering Microbiomes to Improve Plant and Animal Health
U. G. Mueller et al.
TRENDS IN MICROBIOLOGY (2015)
Acknowledging selection at sub-organismal levels resolves controversy on pro-cooperation mechanisms
Wenying Shou
ELIFE (2015)
Selection on soil microbiomes reveals reproducible impacts on plant function
Kevin Panke-Buisse et al.
ISME JOURNAL (2015)
Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics
Adrian W. R. Serohijos et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2014)
Life cycles, fitness decoupling and the evolution of multicellularity
Katrin Hammerschmidt et al.
NATURE (2014)
Genetic drift opposes mutualism during spatial population expansion
Melanie J. I. Mueller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Global epistasis makes adaptation predictable despite sequence-level stochasticity
Sergey Kryazhimskiy et al.
SCIENCE (2014)
Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
Jeremy J. Minty et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Availability of public goods shapes the evolution of competing metabolic strategies
Herwig Bachmann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Long-Term Dynamics of Adaptation in Asexual Populations
Michael J. Wiser et al.
SCIENCE (2013)
Interspecies Interactions Stimulate Diversification of the Streptomyces coelicolor Secreted Metabolome
Matthew F. Traxler et al.
MBIO (2013)
Interspecific bacterial sensing through airborne signals modulates locomotion and drug resistance
Kwang-sun Kim et al.
NATURE COMMUNICATIONS (2013)
Spatial self-organization favors heterotypic cooperation over cheating
Babak Momeni et al.
ELIFE (2013)
Strong inter-population cooperation leads to partner intermixing in microbial communities
Babak Momeni et al.
ELIFE (2013)
The CRISPRs, They Are A-Changin': How Prokaryotes Generate Adaptive Immunity
Edze R. Westra et al.
ANNUAL REVIEW OF GENETICS, VOL 46 (2012)
Understanding microbial cooperation
James A. Damore et al.
JOURNAL OF THEORETICAL BIOLOGY (2012)
Adaptation to a new environment allows cooperators to purge cheaters stochastically
Adam James Waite et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
Carlos L. Araya et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice
Trevor D. Lawley et al.
PLOS PATHOGENS (2012)
Metabolome Profiling Reveals Metabolic Cooperation between Bacillus megaterium and Ketogulonicigenium vulgare during Induced Swarm Motility
Jian Zhou et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Economics of membrane occupancy and respiro-fermentation
Kai Zhuang et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population
Aisha I. Khan et al.
SCIENCE (2011)
Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation
Hsin-Hung Chou et al.
SCIENCE (2011)
Escherichia coli Binary Culture Engineered for Direct Fermentation of Hemicellulose to a Biofuel
Hyun-Dong Shin et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Distribution of Fitness Effects Caused by Single-Nucleotide Substitutions in Bacteriophage f1
Joan B. Peris et al.
GENETICS (2010)
Rapid evolution of stability and productivity at the origin of a microbial mutualism
Kristina L. Hillesland et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Enhancing biodegradation of wastewater by microbial consortia with fractional factorial design
Yuancai Chen et al.
JOURNAL OF HAZARDOUS MATERIALS (2009)
Genome evolution and adaptation in a long-term experiment with Escherichia coli
Jeffrey E. Barrick et al.
NATURE (2009)
Small RNAs in transcriptional gene silencing and genome defence
Danesh Moazed
NATURE (2009)
Simpson's Paradox in a Synthetic Microbial System
John S. Chuang et al.
SCIENCE (2009)
Fractional factorial design
Richard F. Gunst et al.
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS (2009)
Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae
Gregory I. Lang et al.
GENETICS (2008)
Beneficial Fitness Effects Are Not Exponential for Two Viruses
Darin R. Rokyta et al.
JOURNAL OF MOLECULAR EVOLUTION (2008)
Evolution of mammals and their gut microbes
Ruth E. Ley et al.
SCIENCE (2008)
Adaptive mutations in bacteria: High rate and small effects
Lilia Perfeito et al.
SCIENCE (2007)
The distribution of fitness effects of new mutations
Adam Eyre-Walker et al.
NATURE REVIEWS GENETICS (2007)
Artificial selection of simulated microbial ecosystems
Hywel T. P. Williams et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Group selection and kin selection: Two concepts but one process
Laurent Lehmann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Epistatic buffering of fitness loss in yeast double deletion strains
Lukasz Jasnos et al.
NATURE GENETICS (2007)
Synthetic cooperation in engineered yeast populations
Wenying Shou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
Manfred T. Reetz et al.
NATURE PROTOCOLS (2007)
Five rules for the evolution of cooperation
Martin A. Nowak
SCIENCE (2006)
Why have sex? The population genetics of sex and recombination
S. P. Otto et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2006)
067UD Evolution of cooperation by multilevel selection
Arne Traulsen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria
R Kassen et al.
NATURE GENETICS (2006)
Host-microbe interactions: Shaping the evolution of the plant immune response
ST Chisholm et al.
CELL (2006)
An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus
DR Rokyta et al.
NATURE GENETICS (2005)
Effective cellulose degradation by a mixed-culture system composed of a cellulolytic Clostridium and aerobic non-cellulolytic bacteria
S Kato et al.
FEMS MICROBIOLOGY ECOLOGY (2004)
The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
R Sanjuán et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
The contribution of epistasis to the architecture of fitness in an RNA virus
R Sanjuán et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Evolution of cooperation and conflict in experimental bacterial populations
PB Rainey et al.
NATURE (2003)
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
RU Ibarra et al.
NATURE (2002)
The consequences of volatile organic compound mediated bacterial and fungal interactions
RE Wheatley
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2002)
Fitness effects of advantageous mutations in evolving Escherichia coli populations
M Imhof et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Artificial selection of microbial ecosystems for 3-chloroaniline biodegradation
W Swenson et al.
ENVIRONMENTAL MICROBIOLOGY (2000)
Directed evolution of antibody fragments with monovalent femtomolar antigen-binding affinity
ET Boder et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Artificial ecosystem selection
W Swenson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
分享论文
