相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。PACKMOL-Memgen: A Simple-To-Use, Generalized Workflow for Membrane-Protein-Lipid-Bilayer System Building
Stephan Schott-Verdugo et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2019)
Assessment of model accuracy estimations in CASP12
Andriy Kryshtafovych et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2018)
Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age
Joerg Schaarschmidt et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2018)
Targeting HSP90 dimerization via the C terminus is effective in imatinib-resistant CML and lacks the heat shock response
Sanil Bhatia et al.
BLOOD (2018)
Computational protein structure refinement: almost there, yet still so far to go
Michael Feig
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2017)
Crystal structures of a ZIP zinc transporter reveal a binuclear metal center in the transport pathway
Tuo Zhang et al.
SCIENCE ADVANCES (2017)
Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems
Mykola Dimura et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2016)
Perception of the plant hormone ethylene: known-knowns and known-unknowns
Kenneth M. Light et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2016)
SERK Family Receptor-like Kinases Function as Co-receptors with PXY for Plant Vascular Development
Heqiao Zhang et al.
MOLECULAR PLANT (2016)
Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4
Sagar Antala et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Systematic Parameterization of Monovalent Ions Employing the Nonbonded Model
Pengfei Li et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
James A. Maier et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
CCTOP: a Consensus Constrained TOPology prediction web server
Laszlo Dobson et al.
NUCLEIC ACIDS RESEARCH (2015)
Computational modeling of the N-terminus of the human dopamine transporter and its interaction with PIP2-containing membranes
George Khelashvili et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)
Signal Transduction in Histidine Kinases: Insights from New Structures
Manasi P. Bhate et al.
STRUCTURE (2015)
Evolutionary-guided de novo structure prediction of self-associated transmembrane helical proteins with near-atomic accuracy
Y. Wang et al.
NATURE COMMUNICATIONS (2015)
MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
David T. Jones et al.
BIOINFORMATICS (2015)
Structural Model of the Cytosolic Domain of the Plant Ethylene Receptor 1 (ETR1)
Hubert Mayerhofer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling
Bjorn Wallner
BIOINFORMATICS (2014)
Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane)
Gabriel Studer et al.
BIOINFORMATICS (2014)
Lipid14: The Amber Lipid Force Field
Callum J. Dickson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)
An ABA-mimicking ligand that reduces water loss and promotes drought resistance in plants
Minjie Cao et al.
CELL RESEARCH (2013)
SPFP: Speed without compromise-A mixed precision model for GPU accelerated molecular dynamics simulations
Scott Le Grand et al.
COMPUTER PHYSICS COMMUNICATIONS (2013)
Binding Region of Alanopine Dehydrogenase Predicted by Unbiased Molecular Dynamics Simulations of Ligand Diffusion
Holger Gohlke et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2013)
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
Daniel R. Roe et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Comparing the impact of different supporting ligands on copper(I)-ethylene interactions
Jacob B. Geri et al.
POLYHEDRON (2013)
Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era
Hetunandan Kamisetty et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Molecular Mechanism for Plant Steroid Receptor Activation by Somatic Embryogenesis Co-Receptor Kinases
Julia Santiago et al.
SCIENCE (2013)
Mechanisms of signal transduction by ethylene: overlapping and non-overlapping signalling roles in a receptor family
Samina N. Shakeel et al.
AOB PLANTS (2013)
Catalytic residues and a predicted structure of tetrahydrobiopterin-dependent alkylglycerol mono-oxygenase
Katrin Watschinger et al.
BIOCHEMICAL JOURNAL (2012)
Ethylene Receptor 1 (ETR1) Is Sufficient and Has the Predominant Role in Mediating Inhibition of Ethylene Responses by Silver in Arabidopsis thaliana
Brittany K. McDaniel et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Coordination chemistry of copper proteins: How nature handles a toxic cargo for essential function
Jeffrey T. Rubino et al.
JOURNAL OF INORGANIC BIOCHEMISTRY (2012)
Predicting the Coordination Number within Copper Chaperones: Atox1 as Case Study
Tamar Ansbacher et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Structural insight into brassinosteroid perception by BRI1
Ji She et al.
NATURE (2011)
Structural basis of steroid hormone perception by the receptor kinase BRI1
Michael Hothorn et al.
NATURE (2011)
A comparison of methionine, histidine and cysteine in copper(I)-binding peptides reveals differences relevant to copper uptake by organisms in diverse environments
Jeffrey T. Rubino et al.
METALLOMICS (2011)
How significant is a protein structure similarity with TM-score=0.5?
Jinrui Xu et al.
BIOINFORMATICS (2010)
Determination of Ensemble-Average Pairwise Root Mean-Square Deviation from Experimental B-Factors
Antonija Kuzmanic et al.
BIOPHYSICAL JOURNAL (2010)
Calibur: a tool for clustering large numbers of protein decoys
Shuai Cheng Li et al.
BMC BIOINFORMATICS (2010)
Tryptophan Scanning Analysis of the Membrane Domain of CTR-Copper Transporters
Christopher J. De Feo et al.
JOURNAL OF MEMBRANE BIOLOGY (2010)
Ethylene Receptors Function as Components of High-Molecular-Mass Protein Complexes in Arabidopsis
Yi-Feng Chen et al.
PLOS ONE (2010)
Metal-Binding Sites Are Designed to Achieve Optimal Mechanical and Signaling Properties
Anindita Dutta et al.
STRUCTURE (2010)
EIN2, the central regulator of ethylene signalling, is localized at the ER membrane where it interacts with the ethylene receptor ETR1
Melanie M. A. Bisson et al.
BIOCHEMICAL JOURNAL (2009)
Structural basis of abscisic acid signalling
Ken-ichi Miyazono et al.
NATURE (2009)
Prediction of membrane protein structures with complex topologies using limited constraints
P. Barth et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Structural Mechanism of Abscisic Acid Binding and Signaling by Dimeric PYR1
Noriyuki Nishimura et al.
SCIENCE (2009)
A fast and simple method for simultaneous mixed site-specific mutagenesis of a wide coding sequence
Carlo Follo et al.
BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY (2008)
Transfer of copper between bis(thiosemicarbazone) ligands and intracellular copper-binding proteins. Insights into mechanisms of copper uptake and hypoxia selectivity
Zhiguang Xiao et al.
INORGANIC CHEMISTRY (2008)
Cu(I) binding and transfer by the N terminus of the Wilson disease protein
Liliya A. Yatsunyk et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Identification of important regions for ethylene binding and signaling in the transmembrane domain of the ETR1 ethylene receptor of Arabidopsis
Wuyi Wang et al.
PLANT CELL (2006)
Automatic atom type and bond type perception in molecular mechanical calculations
Junmei Wang et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2006)
Prediction of transmembrane helix orientation in polytopic membrane proteins
Larisa Adamian et al.
BMC STRUCTURAL BIOLOGY (2006)
Subcellular localization and membrane topology of the melon ethylene receptor CmERS1
Biao Ma et al.
PLANT PHYSIOLOGY (2006)
Multipass membrane protein structure prediction using Rosetta
V Yarov-Yarovoy et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Ethylene-binding activity, gene expression levels, and receptor system output for ethylene receptor family members from Arabidopsis and tomato
RC O'Malley et al.
PLANT JOURNAL (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology
M Feig et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2004)
Binding of copper(I) by the Wilson disease protein and its copper chaperone
AK Wernimont et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Development and testing of a general amber force field
JM Wang et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Langevin dynamics in constant pressure extended systems
D Quigley et al.
JOURNAL OF CHEMICAL PHYSICS (2004)
Generalized born model with a simple smoothing function
WP Im et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2003)
Tryptophan scanning mutagenesis in the αM3 transmembrane domain of the Torpedo californica acetylcholine receptor:: Functional and structural implications
GR Guzmán et al.
BIOCHEMISTRY (2003)
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
C Dominguez et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)
High-level expression of the Arabidopsis thaliana ethylene receptor protein ETR1 in Escherichia coli and purification of the recombinant protein
J Voet-Van-Vormizeele et al.
PROTEIN EXPRESSION AND PURIFICATION (2003)
Raman and extended X-ray absorption fine structure characterization of a sulfur-ligated Cu(I) ethylene complex:: Modeling the proposed ethylene binding site of Arabidopsis thaliana ETR1
J Hirsch et al.
INORGANIC CHEMISTRY (2001)