4.8 Article

Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

Aziz Khan et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

DNA-binding landscape of IRF3, IRF5 and IRF7 dimers: implications for dimer-specific gene regulation

Kellen K. Andrilenas et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Cryptic glucocorticoid receptor-binding sites pervade genomic NF-κB response elements

William H. Hudson et al.

NATURE COMMUNICATIONS (2018)

Review Biochemistry & Molecular Biology

The nuclear receptor superfamily: A structural perspective

Emily R. Weikum et al.

PROTEIN SCIENCE (2018)

Article Biochemical Research Methods

SMiLE-seq identifies binding motifs of single and dimeric transcription factors

Alina Isakova et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences

Munazah Andrabi et al.

SCIENTIFIC REPORTS (2017)

Article Multidisciplinary Sciences

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

Stefanie Schoene et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo

Raymond E. Soccio et al.

Article Biochemistry & Molecular Biology

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

Amandine Chatagnon et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Quantitative modeling of transcription factor binding specificities using DNA shape

Tianyin Zhou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Nuclear Receptors, RXR, and the Big Bang

Ronald M. Evans et al.

Article Biochemistry & Molecular Biology

Structure of the retinoid X receptor α-liver X receptor β (RXRα-LXRβ) heterodimer on DNA

Xiaohua Lou et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)

Article Biochemistry & Molecular Biology

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

Lin Yang et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Cell Biology

Pleiotropic Roles of Bile Acids in Metabolism

Thomas Q. de Aguiar Vallim et al.

CELL METABOLISM (2013)

Review Endocrinology & Metabolism

Understanding nuclear receptor form and function using structural biology

Fraydoon Rastinejad et al.

JOURNAL OF MOLECULAR ENDOCRINOLOGY (2013)

Article Biochemistry & Molecular Biology

The glucocorticoid receptor dimer interface allosterically transmits sequence-specific DNA signals

Lisa C. Watson et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Medicine, Research & Experimental

Cell-specific integration of nuclear receptor function at the genome

Logan J. Everett et al.

WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2013)

Review Cell Biology

Endocrine fibroblast growth factors 15/19 and 21: from feast to famine

Matthew J. Potthoff et al.

GENES & DEVELOPMENT (2012)

Review Cell Biology

Transcriptional integration of metabolism by the nuclear sterol-activated receptors LXR and FXR

Anna C. Calkin et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Identification of a binding motif specific to HNF4 by comparative analysis of multiple nuclear receptors

Bin Fang et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Cell Biology

Evolution of the repertoire of nuclear receptor binding sites in genomes

David Cotnoir-White et al.

MOLECULAR AND CELLULAR ENDOCRINOLOGY (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Cell-Specific Determinants of Peroxisome Proliferator-Activated Receptor γ Function in Adipocytes and Macrophages

Martina I. Lefterova et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Article Multidisciplinary Sciences

DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

Sebastiaan H. Meijsing et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Allosteric Effects Govern Nuclear Receptor Action: DNA Appears as a Player

Hinrich Gronemeyer et al.

SCIENCE SIGNALING (2009)

Article Multidisciplinary Sciences

Structure of the intact PPAR-γ-RXR-α nuclear receptor complex on DNA

Vikas Chandra et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Thyroid hormone response element organization dictates the composition of active receptor

Lara F. R. Velasco et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biotechnology & Applied Microbiology

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

Michael F. Berger et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemistry & Molecular Biology

TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes

V. Matys et al.

NUCLEIC ACIDS RESEARCH (2006)