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Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands
Julia Kyaschenko et al.
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PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data
Sten Anslan et al.
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Klaus Schlaeppi et al.
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Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
Patrick D. Schloss et al.
PEERJ (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
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Oomycete-specific ITS primers for identification and metabarcoding
Taavi Riit et al.
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Stefan Geisen et al.
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Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies
Ida Baerholm Schnell et al.
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Leho Tedersoo et al.
MycoKeys (2015)
Parsing ecological signal from noise in next generation amplicon sequencing
Nhu H. Nguyen et al.
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ITS1: a DNA barcode better than ITS2 in eukaryotes?
Xin-Cun Wang et al.
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Bruce E. Deagle et al.
BIOLOGY LETTERS (2014)
Global diversity and geography of soil fungi
Leho Tedersoo et al.
SCIENCE (2014)
Towards a unified paradigm for sequence-based identification of fungi
Urmas Koljalg et al.
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UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Johan Bengtsson-Palme et al.
METHODS IN ECOLOGY AND EVOLUTION (2013)
CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
Jan Pawlowski et al.
PLOS BIOLOGY (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
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Discovery of novel intermediate forms redefines the fungal tree of life
Meredith D. M. Jones et al.
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V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16 S/18 S) ribosomal RNA gene sequences
Martin Hartmann et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2010)
Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals
Hui Yao et al.
PLOS ONE (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
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Annette W. Coleman
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Linda A. Amaral-Zettler et al.
PLOS ONE (2009)
Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers
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