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Rachel M. Sherman et al.
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Xihong Wang et al.
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Sudhir Kumar et al.
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Wei Shen et al.
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Danny Leung et al.
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Mihaela Pertea et al.
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Huashui Ai et al.
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Laurent A. F. Frantz et al.
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Daehwan Kim et al.
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Daniel E. Neafsey et al.
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Carlotta Maria Vaccari et al.
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Suhas S. P. Rao et al.
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Ying-hui Li et al.
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Candice N. Hirsch et al.
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Philip A. Knight et al.
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Mingzhou Li et al.
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Comparative Epigenomic Annotation of Regulatory DNA
Shu Xiao et al.
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Toru Uyama et al.
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Chen Xie et al.
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Aaron McKenna et al.
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The Sequence Alignment/Map format and SAMtools
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Heng Li et al.
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Christiam Camacho et al.
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Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
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WindowMasker:: window-based masker for sequenced genomes
A Morgulis et al.
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G Larson et al.
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BLAT - The BLAST-like alignment tool
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Systematic identification of novel protein domain families associated with nuclear functions
T Doerks et al.
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