相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Real-Time Modeling Should Be Routinely Integrated into Outbreak Response
Daniel G. Bausch et al.
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2018)
Nextstrain: real-time tracking of pathogen evolution
James Hadfield et al.
BIOINFORMATICS (2018)
Genomic Insights into Zika Virus Emergence and Spread
Nathan D. Grubaugh et al.
CELL (2018)
Ebola virus disease: 11323 deaths later, how far have we come?
Joseph A. Lewnard
LANCET (2018)
Outbreak of Ebola virus disease in the Democratic Republic of the Congo, April-May, 2018: an epidemiological study
Steve Ahuka-Mundeke et al.
LANCET (2018)
Risk factors for measles mortality and the importance of decentralized case management during an unusually large measles epidemic in eastern Democratic Republic of Congo in 2013
Etienne Gignoux et al.
PLOS ONE (2018)
A comparison of smartphone and paper data collection tools in the Burden of Obstructive Lung Disease (BOLD) study in Gezira state, Sudan
Rana Ahmed et al.
PLOS ONE (2018)
The Global Virome Project
Dennis Carroll et al.
SCIENCE (2018)
Evidence Synthesis for Stochastic Epidemic Models
Paul J. Birrell et al.
STATISTICAL SCIENCE (2018)
A simple approach to measure transmissibility and forecast incidence
Pierre Nouvellet et al.
EPIDEMICS (2018)
Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model
Sebastian Funk et al.
EPIDEMICS (2018)
The RAPIDD ebola forecasting challenge: Synthesis and lessons learnt
Cecile Viboud et al.
EPIDEMICS (2018)
When are pathogen genome sequences informative of transmission events?
Finlay Campbell et al.
PLOS PATHOGENS (2018)
Quality Assurance and Quality Control in the Global Trachoma Mapping Project
Anthony W. Solomon et al.
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2018)
Pandemics: spend on surveillance, not prediction
Edward C. Holmes et al.
NATURE (2018)
Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018
Katherine J. Siddle et al.
NEW ENGLAND JOURNAL OF MEDICINE (2018)
World Health Organization Early Warning, Alert and Response System in the Rohingya Crisis, Bangladesh, 2017-2018
Basel Karo et al.
EMERGING INFECTIOUS DISEASES (2018)
International risk of yellow fever spread from the ongoing outbreak in Brazil, December 2016 to May 2017
I. Dorigatti et al.
EUROSURVEILLANCE (2017)
Local, national, and regional viral haemorrhagic fever pandemic potential in Africa: a multistage analysis
David M. Pigott et al.
LANCET (2017)
Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study
Moritz U. G. Kraemer et al.
LANCET INFECTIOUS DISEASES (2017)
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
N. R. Faria et al.
NATURE (2017)
Virus genomes reveal factors that spread and sustained the Ebola epidemic
Gytis Dudas et al.
NATURE (2017)
Contact tracing performance during the Ebola virus disease outbreak in Kenema district, Sierra Leone
Mikiko Senga et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Key data for outbreak evaluation: building on the Ebola experience
Anne Cori et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Probabilistic forecasting in infectious disease epidemiology: the 13th Armitage lecture
Leonhard Held et al.
STATISTICS IN MEDICINE (2017)
Real-time dynamic modelling for the design of a cluster-randomized phase 3 Ebola vaccine trial in Sierra Leone
A. Camacho et al.
VACCINE (2017)
Targeted DNA sequencing and in situ mutation analysis using mobile phone microscopy
Malte Kuhnemund et al.
NATURE COMMUNICATIONS (2017)
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
Don Klinkenberg et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Role of contact tracing in containing the 2014 Ebola outbreak: a review
Shrivastava Saurabh et al.
AFRICAN HEALTH SCIENCES (2017)
Evaluation of a Mobile Phone-Based Microscope for Screening of Schistosoma haematobium Infection in Rural Ghana
Isaac I. Bogoch et al.
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2017)
Mobile phone-based biosensing: An emerging diagnostic and communication technology
Daniel Quesada-Gonzalez et al.
BIOSENSORS & BIOELECTRONICS (2017)
Perspectives on model forecasts of the 2014-2015 Ebola epidemic in West Africa: lessons and the way forward
Gerardo Chowell et al.
BMC MEDICINE (2017)
Factors associated with high heterogeneity of malaria at fine spatial scale in the Western Kenyan highlands
Amrish Y. Baidjoe et al.
MALARIA JOURNAL (2016)
Real-time, portable genome sequencing for Ebola surveillance
Joshua Quick et al.
NATURE (2016)
Ebola Virus Disease among Male and Female Persons in West Africa
Junerlyn Agua-Agum et al.
NEW ENGLAND JOURNAL OF MEDICINE (2016)
Unraveling the drivers of MERS-CoV transmission
Simon Cauchemez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent
Nicola De Maio et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Spatiotemporal Analysis of the 2014 Ebola Epidemic in West Africa
Jantien A. Backer et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
The Impact of Hotspot-Targeted Interventions on Malaria Transmission in Rachuonyo South District in the Western Kenyan Highlands: A Cluster-Randomized Controlled Trial
Teun Bousema et al.
PLOS MEDICINE (2016)
Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study
Junerlyn Agua-Agum et al.
PLOS MEDICINE (2016)
Mapping global environmental suitability for Zika virus
Jane P. Messina et al.
ELIFE (2016)
Declaring a tuberculosis outbreak over with genomic epidemiology
Hollie-Ann Hatherell et al.
MICROBIAL GENOMICS (2016)
Objective Determination of End of MERS Outbreak, South Korea, 2015
Hiroshi Nishiura et al.
EMERGING INFECTIOUS DISEASES (2016)
Public Health Investigation of Two Outbreaks of Shiga Toxin-Producing Escherichia coli O157 Associated with Consumption of Watercress
Claire Jenkins et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Accounting for behavioral responses during a flu epidemic using home television viewing
Michael Springborn et al.
BMC INFECTIOUS DISEASES (2015)
Emergence and potential for spread of Chikungunya virus in Brazil
Marcio Roberto Teixeira Nunes et al.
BMC MEDICINE (2015)
Assessing the risk of observing multiple generations of Middle East respiratory syndrome (MERS) cases given an imported case
H. Nishiura et al.
EUROSURVEILLANCE (2015)
A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: 'near real-time' application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014
T. Inns et al.
EUROSURVEILLANCE (2015)
Surveillance and Outbreak Response Management System (SORMAS) to support the control of the Ebola virus disease outbreak in West Africa
C Fähnrich et al.
Eurosurveillance (2015)
Ebola Virus: Sensationalism, Science, and Human Rights
Daniel G. Bausch et al.
JOURNAL OF INFECTIOUS DISEASES (2015)
Will Ebola change the game? Ten essential reforms before the next pandemic. The report of the Harvard-LSHTM Independent Panel on the Global Response to Ebola
Suerie Moon et al.
LANCET (2015)
Global, regional, and national incidence, prevalence, and years lived with disability for 301 acute and chronic diseases and injuries in 188 countries, 1990-2013: a systematic analysis for the Global Burden of Disease Study 2013
Theo Vos et al.
LANCET (2015)
The role of rapid diagnostics in managing Ebola epidemics
Pierre Nouvellet et al.
NATURE (2015)
Ebola Virus Disease among Children in West Africa
Junerlyn Agua-Agum et al.
NEW ENGLAND JOURNAL OF MEDICINE (2015)
West African Ebola Epidemic after One Year - Slowing but Not Yet under Control
NEW ENGLAND JOURNAL OF MEDICINE (2015)
Measuring the impact of Ebola control measures in Sierra Leone
Adam J. Kucharski et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Avoidable errors in the modelling of outbreaks of emerging pathogens, with special reference to Ebola
Aaron A. King et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Estimating the probability of demonstrating vaccine efficacy in the declining Ebola epidemic: a Bayesian modelling approach
Anton Camacho et al.
BMJ OPEN (2015)
Extracting transmission networks from phylogeographic data for epidemic and endemic diseases: Ebola virus in Sierra Leone, 2009 H1N1 pandemic influenza and polio in Nigeria
Michael Famulare et al.
INTERNATIONAL HEALTH (2015)
Geographic Distribution and Mortality Risk Factors during the Cholera Outbreak in a Rural Region of Haiti, 2010-2011
Anne-Laure Page et al.
PLOS NEGLECTED TROPICAL DISEASES (2015)
A review of epidemiological parameters from Ebola outbreaks to inform early public health decision-making
Maria D. Van Kerkhove et al.
SCIENTIFIC DATA (2015)
Innovative Technological Approach to Ebola Virus Disease Outbreak Response in Nigeria Using the Open Data Kit and Form Hub Technology
Daniel Tom-Aba et al.
PLOS ONE (2015)
Zika Virus Outbreak, Bahia, Brazil
Gubio S. Campos et al.
EMERGING INFECTIOUS DISEASES (2015)
A comparison of smartphones to paper-based questionnaires for routine influenza sentinel surveillance, Kenya, 2011-2012
Henry N. Njuguna et al.
BMC MEDICAL INFORMATICS AND DECISION MAKING (2014)
Risk factors for cholera transmission in Haiti during inter-peak periods: insights to improve current control strategies from two case-control studies
F. Grandesso et al.
EPIDEMIOLOGY AND INFECTION (2014)
Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data
Xavier Didelot et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility
Simon Cauchemez et al.
LANCET INFECTIOUS DISEASES (2014)
Ebola Virus Disease in West Africa - The First 9 Months of the Epidemic and Forward Projections
Bruce Aylward et al.
NEW ENGLAND JOURNAL OF MEDICINE (2014)
Descriptive Epidemiology of Typhoid Fever during an Epidemic in Harare, Zimbabwe, 2012
Jonathan A. Polonsky et al.
PLOS ONE (2014)
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
Stephen K. Gire et al.
SCIENCE (2014)
OutbreakTools: A new platform for disease outbreak analysis using the R software
Thibaut Jombart et al.
EPIDEMICS (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Thibaut Jombart et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Yellow Fever in Africa: Estimating the Burden of Disease and Impact of Mass Vaccination from Outbreak and Serological Data
Tini Garske et al.
PLOS MEDICINE (2014)
Mapping the zoonotic niche of Ebola virus disease in Africa
David M. Pigott et al.
ELIFE (2014)
A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics
Anne Cori et al.
AMERICAN JOURNAL OF EPIDEMIOLOGY (2013)
Relating Phylogenetic Trees to Transmission Trees of Infectious Disease Outbreaks
Rolf J. F. Ypma et al.
GENETICS (2013)
Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study
Matthew Cotten et al.
LANCET (2013)
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
Simon R. Harris et al.
LANCET INFECTIOUS DISEASES (2013)
A Novel Electronic Data Collection System for Large-Scale Surveys of Neglected Tropical Diseases
Jonathan D. King et al.
PLOS ONE (2013)
Genomics and outbreak investigation: from sequence to consequence
Esther R. Robinson et al.
GENOME MEDICINE (2013)
ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R
Andrei-Alin Popescu et al.
BIOINFORMATICS (2012)
The R0 package: a toolbox to estimate reproduction numbers for epidemic outbreaks
Thomas Obadia et al.
BMC MEDICAL INFORMATICS AND DECISION MAKING (2012)
Years lived with disability (YLDs) for 1160 sequelae of 289 diseases and injuries 1990-2010: a systematic analysis for the Global Burden of Disease Study 2010
Theo Vos et al.
LANCET (2012)
The Impact of Infection on Population Health: Results of the Ontario Burden of Infectious Diseases Study
Jeffrey C. Kwong et al.
PLOS ONE (2012)
Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data
R. J. F. Ypma et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
Reconstructing disease outbreaks from genetic data: a graph approach
T. Jombart et al.
HEREDITY (2011)
German Outbreak of Escherichia coli O104:H4 Associated with Sprouts
Udo Buchholz et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza
Simon Cauchemez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
High-throughput sequencing and clinical microbiology: progress, opportunities and challenges
Mark J. Pallen et al.
CURRENT OPINION IN MICROBIOLOGY (2010)
Inference in Epidemic Models without Likelihoods
Trevelyan McKinley et al.
INTERNATIONAL JOURNAL OF BIOSTATISTICS (2009)
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
Gavin J. D. Smith et al.
NATURE (2009)
EpiCollect: Linking Smartphones to Web Applications for Epidemiology, Ecology and Community Data Collection
David M. Aanensen et al.
PLOS ONE (2009)
Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings
Christophe Fraser et al.
SCIENCE (2009)
Modeling Infectious Diseases in Humans and Animals:Modeling Infectious Diseases in Humans and Animals
Matthew James Keeling et al.
CLINICAL INFECTIOUS DISEASES (2008)
HealthMap: Global infectious disease monitoring through automated classification and visualization of Internet media reports
Clark C. Freifeld et al.
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION (2008)
Time is of the essence: exploring a measles outbreak response vaccination in Niamey, Niger
R. F. Grais et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2008)
Estimating the impact of school closure on influenza transmission from Sentinel data
Simon Cauchemez et al.
NATURE (2008)
Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus
Eleanor M. Cottam et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
Surveillance:: An R package for the monitoring of infectious diseases
Michael Hoehle
COMPUTATIONAL STATISTICS (2007)
How generation intervals shape the relationship between growth rates and reproductive numbers
J. Wallinga et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2007)
A hypothesis test for the end of a common source outbreak
R Brookmeyer et al.
BIOMETRICS (2006)
eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
EJ Feil et al.
JOURNAL OF BACTERIOLOGY (2004)
Unifying the epidemiological and evolutionary dynamics of pathogens
BT Grenfell et al.
SCIENCE (2004)
Different epidemic curves for severe acute respiratory syndrome reveal similar impacts of control measures
J Wallinga et al.
AMERICAN JOURNAL OF EPIDEMIOLOGY (2004)
Displaying the relatedness among isolates of bacterial species - the eBURST approach
BG Spratt et al.
FEMS MICROBIOLOGY LETTERS (2004)
Epidemiology, transmission dynamics and control of SARS: the 2002-2003 epidemic
RM Anderson et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)
Multi-locus sequence typing: a tool for global epidemiology
R Urwin et al.
TRENDS IN MICROBIOLOGY (2003)
MrBayes 3: Bayesian phylogenetic inference under mixed models
F Ronquist et al.
BIOINFORMATICS (2003)
Epidemiological determinants of spread of causal agent of severe acute respiratory syndrome in Hong Kong
CA Donnelly et al.
LANCET (2003)
Development of a multilocus sequence typing scheme for the pig pathogen Streptococcus suis:: Identification of virulent clones and potential capsular serotype exchange
SJ King et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2002)
The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA)
MC Enright et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
分享论文
