相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The Prevalence and Evolutionary Conservation of Inverted Repeats in Proteobacteria
Bar Lavi et al.
GENOME BIOLOGY AND EVOLUTION (2018)
Structure and mechanism of mitochondrial electron transport chain
Runyu Guo et al.
BIOMEDICAL JOURNAL (2018)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Database resources of the National Center for Biotechnology Information
Richa Agarwala et al.
NUCLEIC ACIDS RESEARCH (2016)
The complete mitochondrial genome sequence of the green microalga Lobosphaera (Parietochloris) incisa reveals a new type of palindromic repetitive repeat
Nicolas J. Tourasse et al.
BMC GENOMICS (2015)
The Mitochondrial-Derived Peptide MOTS-c Promotes Metabolic Homeostasis and Reduces Obesity and Insulin Resistance
Changhan Lee et al.
CELL METABOLISM (2015)
Large gene overlaps and tRNA processing in the compact mitochondrial genome of the crustacean Armadillidium vulgare
Vincent Doublet et al.
RNA BIOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
GAP-Seq: a method for identification of DNA palindromes
Hui Yang et al.
BMC GENOMICS (2014)
Massive programmed translational jumping in mitochondria
B. Franz Lang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Using Tablet for visual exploration of second-generation sequencing data
Iain Milne et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Palindromic Genes in the Linear Mitochondrial Genome of the Nonphotosynthetic Green Alga Polytomella magna
David Roy Smith et al.
GENOME BIOLOGY AND EVOLUTION (2013)
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
Gordon Gremme et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity
Svetlana A. Shabalina et al.
NUCLEIC ACIDS RESEARCH (2013)
Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly
Chungoo Park et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Viral Proteins Originated De Novo by Overprinting Can Be Identified by Codon Usage: Application to the Gene Nursery of Deltaretroviruses
Angelo Pavesi et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Strong Purifying Selection at Synonymous Sites in D. melanogaster
David S. Lawrie et al.
PLOS GENETICS (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Assessment of mitochondrial respiratory chain enzymatic activities on tissues and cultured cells
Marco Spinazzi et al.
NATURE PROTOCOLS (2012)
The HIV-1 Rev Response Element An RNA scaffold that directs the cooperative assembly of a homo-oligomeric ribonucleoprotein complex
Jason D. Fernandes et al.
RNA BIOLOGY (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
Of circles, forks and humanity: Topological organisation and replication of mammalian mitochondrial DNA
Jaakko L. O. Pohjoismaeki et al.
BIOESSAYS (2011)
FACIL: Fast and Accurate Genetic Code Inference and Logo
Bas E. Dutilh et al.
BIOINFORMATICS (2011)
Probable presence of an ubiquitous cryptic mitochondrial gene on the antisense strand of the cytochrome oxidase I gene
Eric Faure et al.
BIOLOGY DIRECT (2011)
Cruciform structures are a common DNA feature important for regulating biological processes
Vaclav Brazda et al.
BMC MOLECULAR BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Fast evolving 18S rRNA sequences from Solenogastres (Mollusca) resist standard PCR amplification and give new insights into mollusk substitution rate heterogeneity
Achim Meyer et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Positions of Trp Codons in the Leader Peptide-Coding Region of the at Operon Influence Anti-Trap Synthesis and trp Operon Expression in Bacillus licheniformis
Anastasia Levitin et al.
JOURNAL OF BACTERIOLOGY (2010)
Folded DNA in Action: Hairpin Formation and Biological Functions in Prokaryotes
David Bikard et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2010)
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
Federico Abascal et al.
NUCLEIC ACIDS RESEARCH (2010)
Why genes overlap in viruses
Nicola Chirico et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Minghui Jiang et al.
BMC BIOINFORMATICS (2008)
Composition Profiler: a tool for discovery and visualization of amino acid composition differences
Vladimir Vacic et al.
BMC BIOINFORMATICS (2007)
Evidence for Active Maintenance of Inverted Repeat Structures Identified by a Comparative Genomic Approach
Guoyan Zhao et al.
PLOS ONE (2007)
SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics
Beatrice Roure et al.
BMC EVOLUTIONARY BIOLOGY (2007)
SECIS elements in the coding regions of selenoprotein transcripts are functional in higher eukaryotes
Heiko Mix et al.
NUCLEIC ACIDS RESEARCH (2007)
Unusually Long Palindromes Are Abundant in Mitochondrial Control Regions of Insects and Nematodes
K. P. Arunkumar et al.
PLOS ONE (2006)
GenDecoder: genetic code prediction for metazoan mitochondria
Federico Abascal et al.
NUCLEIC ACIDS RESEARCH (2006)
Oxygen tension regulates mitochondrial DNA-encoded complex I gene expression
JI Piruat et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs
IM Meyer et al.
NUCLEIC ACIDS RESEARCH (2005)
Autoimmunity is triggered by cPR-3(105-201), a protein complementary to human autoantigen proteinase-3
WF Pendergraft et al.
NATURE MEDICINE (2004)
Properties of overlapping genes are conserved across microbial genomes
ZI Johnson et al.
GENOME RESEARCH (2004)
Inverted repeat structure of the human genome: The X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes
PE Warburton et al.
GENOME RESEARCH (2004)
Strand misalignments lead to quasipalindrome correction
V van Noort et al.
TRENDS IN GENETICS (2003)
Abundant gene conversion between arms of palindromes in human and ape Y chromosomes
S Rozen et al.
NATURE (2003)
Protein coding palindromes are a unique but recurrent feature in Rickettsia
H Ogata et al.
GENOME RESEARCH (2002)
REPuter: the manifold applications of repeat analysis on a genomic scale
S Kurtz et al.
NUCLEIC ACIDS RESEARCH (2001)
Molecular biology - Protein encoding by both DNA strands
M Labrador et al.
NATURE (2001)
Selfish DNA in protein-coding genes of Rickettsia
H Ogata et al.
SCIENCE (2000)
分享论文
