相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The expanding landscape of 'oncohistone' mutations in human cancers
Benjamin A. Nacev et al.
NATURE (2019)
Structural insight into nucleosome transcription by RNA polymerase II with elongation factors
Haruhiko Ehara et al.
SCIENCE (2019)
FACT and Ubp10 collaborate to modulate H2B deubiquitination and nucleosome dynamics
Melesse Nune et al.
ELIFE (2019)
Structural rearrangements of the histone octamer translocate DNA
Silvija Bilokapic et al.
NATURE COMMUNICATIONS (2018)
The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h
Nathan Gamarra et al.
ELIFE (2018)
Transcription Promotes the Interaction of the FAcilitates Chromatin Transactions (FACT) Complex with Nucleosomes in Saccharomyces cerevisiae
Benjamin J. E. Martin et al.
GENETICS (2018)
Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae
Amelia J. Hodges et al.
GENETICS (2017)
MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers
Razvan V. Chereji et al.
MOLECULAR CELL (2017)
ISWI chromatin remodellers sense nucleosome modifications to determine substrate preference
Geoffrey P. Dann et al.
NATURE (2017)
Histone chaperone networks shaping chromatin function
Colin M. Hammond et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
Distortion of histone octamer core promotes nucleosome mobilization by a chromatin remodeler
Kalyan K. Sinha et al.
SCIENCE (2017)
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex
Youwei Xu et al.
NATURE COMMUNICATIONS (2017)
Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae
Amelia J. Hodges et al.
GENETICS (2017)
Nucleosome repositioning underlies dynamic gene expression
Nicolas Nocetti et al.
GENES & DEVELOPMENT (2016)
Integrated molecular mechanism directing nucleosome reorganization by human FACT
Yasuo Tsunaka et al.
GENES & DEVELOPMENT (2016)
The Modifier of Transcription 1 (Mott) ATPase and Spt16 Histone Chaperone Co-regulate Transcription through Preinitiation Complex Assembly and Nucleosome Organization
Jason D. True et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2016)
Noncoding Transcription Is a Driving Force for Nucleosome Instability in spt16 Mutant Cells
Jianxun Feng et al.
MOLECULAR AND CELLULAR BIOLOGY (2016)
The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6
S. Branden Van Oss et al.
MOLECULAR CELL (2016)
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Mihaela Pertea et al.
NATURE PROTOCOLS (2016)
Structural mechanism for the recognition and ubiquitination of a single nucleosome residue by Rad6-Bre1
Laura D. Gallego et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Mutational landscape of uterine and ovarian carcinosarcomas implicates histone genes in epithelial-mesenchymal transition
Siming Zhao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Structural basis for histone H2B deubiquitination by the SAGA DUB module
Michael T. Morgan et al.
SCIENCE (2016)
Lateral Thinking: How Histone Modifications Regulate Gene Expression
Moyra Lawrence et al.
TRENDS IN GENETICS (2016)
The Chd1 chromatin remodeler shifts hexasomes unidirectionally
Robert F. Levendosky et al.
ELIFE (2016)
In Vivo Mapping of FACT-Histone Interactions Identifies a Role of Pob3 C-terminus in H2A-H2B Binding
Christian Hoffmann et al.
ACS CHEMICAL BIOLOGY (2015)
FACT Disrupts Nucleosome Structure by Binding H2A-H2B with Conserved Peptide Motifs
David J. Kemble et al.
MOLECULAR CELL (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
The Nucleosome Acidic Patch Regulates the H2B K123 Monoubiquitylation Cascade and Transcription Elongation in Saccharomyces cerevisiae
Christine E. Cucinotta et al.
PLOS GENETICS (2015)
Nucleosome Structure and Function
Robert K. McGinty et al.
CHEMICAL REVIEWS (2015)
Catalysis-dependent stabilization of Bre1 fine-tunes histone H2B ubiquitylation to regulate gene transcription
Glenn G. Wozniak et al.
GENES & DEVELOPMENT (2014)
Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast aging
Zheng Hu et al.
GENES & DEVELOPMENT (2014)
Cotranscriptional histone H2B monoubiquitylation is tightly coupled with RNA polymerase II elongation rate
Gilad Fuchs et al.
GENOME RESEARCH (2014)
H2B Ubiquitylation Promotes RNA Pol II Processivity via PAF1 and pTEFb
Lipeng Wu et al.
MOLECULAR CELL (2014)
Tyrosine phosphorylation of histone H2A by CK2 regulates transcriptional elongation
Harihar Basnet et al.
NATURE (2014)
Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome
Robert K. McGinty et al.
NATURE (2014)
deepTools: a flexible platform for exploring deep-sequencing data
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2014)
A Cascade of Histone Modifications Induces Chromatin Condensation in Mitosis
Bryan J. Wilkins et al.
SCIENCE (2014)
The nucleosome acidic patch plays a critical role in RNF168-dependent ubiquitination of histone H2A
Francesca Mattiroli et al.
NATURE COMMUNICATIONS (2014)
Nucleosome Acidic Patch Promotes RNF168-and RING1B/BMI1-Dependent H2AX and H2A Ubiquitination and DNA Damage Signaling
Justin W. Leung et al.
PLOS GENETICS (2014)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
The role of the nucleosome acidic patch in modulating higher order chromatin structure
Anna A. Kalashnikova et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2013)
The Recruitment of the Saccharomyces cerevisiae Paf1 Complex to Active Genes Requires a Domain of Rtf1 That Directly Interacts with the Spt4-Spt5 Complex
Manasi K. Mayekar et al.
MOLECULAR AND CELLULAR BIOLOGY (2013)
Structural basis of histone H2A-H2B recognition by the essential chaperone FACT
Maria Hondele et al.
NATURE (2013)
Structural insights into Paf1 complex assembly and histone binding
Xinlei Chu et al.
NUCLEIC ACIDS RESEARCH (2013)
Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin
Adam D. Wier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The role of FACT in making and breaking nucleosomes
Tim Formosa
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2012)
Pol II CTD kinases Bur1 and Kin28 promote Spt5 CTR-independent recruitment of Paf1 complex
Hongfang Qiu et al.
EMBO JOURNAL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Histone H3R17me2a mark recruits human RNA Polymerase-Associated Factor 1 Complex to activate transcription
Jiacai Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Small region of Rtf1 protein can substitute for complete Paf1 complex in facilitating global histone H2B ubiquitylation in yeast
Anthony S. Piro et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Global analysis of core histones reveals nucleosomal surfaces required for chromosome bi-orientation
Satoshi Kawashima et al.
EMBO JOURNAL (2011)
Splitting the task: Ubp8 and Ubp10 deubiquitinate different cellular pools of H2BK123
Julia M. Schulze et al.
GENES & DEVELOPMENT (2011)
Genome-wide function of H2B ubiquitylation in promoter and genic regions
Kiran Batta et al.
GENES & DEVELOPMENT (2011)
Identification of a Role for Histone H2B Ubiquitylation in Noncoding RNA 3′-End Formation Through Mutational Analysis of Rtf1 in Saccharomyces cerevisiae
Brett N. Tomson et al.
GENETICS (2011)
The Histone Chaperone FACT: Structural Insights and Mechanisms for Nucleosome Reorganization
Duane D. Winkler et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
The RING Finger Protein MSL2 in the MOF Complex Is an E3 Ubiquitin Ligase for H2B K34 and Is Involved in Crosstalk with H3 K4 and K79 Methylation
Lipeng Wu et al.
MOLECULAR CELL (2011)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction
Beat Fierz et al.
NATURE CHEMICAL BIOLOGY (2011)
The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes
Lacramioara Bintu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome
Zhenhai Zhang et al.
SCIENCE (2011)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
RAD6-Mediated Transcription-Coupled H2B Ubiquitylation Directly Stimulates H3K4 Methylation in Human Cells
Jaehoon Kim et al.
CELL (2009)
yFACT Induces Global Accessibility of Nucleosomal DNA without H2A-H2B Displacement
Hua Xin et al.
MOLECULAR CELL (2009)
Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability
Mahesh B. Chandrasekharan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells
Neri Minsky et al.
NATURE CELL BIOLOGY (2008)
A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation
Shima Nakanishi et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
The FACT Spt16 peptidase domain is a histone H3-H4 binding module
Tobias Stuwe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits
Andrew P. VanDemark et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Rtf1 is a multifunctional component of the paf1 complex that regulates gene expression by directing cotranscriptional histone modification
Marcie H. Warner et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Ubiquitylation of histone H2B controls RNA polymerase II transcription elongation independently of histone H3 methylation
Jason C. Tanny et al.
GENES & DEVELOPMENT (2007)
HB tag modules for PCR-based gene tagging and tandem affinity purification in Saccharomyces cerevisiae
Christian Tagwerker et al.
YEAST (2006)
Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II
Rushad Pavri et al.
CELL (2006)
The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA
AJ Barbera et al.
SCIENCE (2006)
Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing
NCT Emre et al.
MOLECULAR CELL (2005)
Histone H2B ubiquitylation is associated with elongating RNA polymerase II
TJ Xiao et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription
JA Daniel et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Evidence for eviction and rapid deposition of histories upon transcriptional elongation by RNA polymerase II
MA Schwabish et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p
A Wood et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B
HH Ng et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
An expanded eukaryotic genetic code
JW Chin et al.
SCIENCE (2003)
Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter
A Wood et al.
MOLECULAR CELL (2003)
A conserved RING finger protein required for histone H2B monoubiquitination and cell size control
WW Hwang et al.
MOLECULAR CELL (2003)
Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8
KW Henry et al.
GENES & DEVELOPMENT (2003)
Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli
JW Chin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6
J Dover et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Gene silencing -: Trans-histone regulatory pathway in chromatin
SD Briggs et al.
NATURE (2002)
Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast
ZW Sun et al.
NATURE (2002)
The Paf1 complex physically and functionally associates with transcription elongation factors in vivo
SL Squazzo et al.
EMBO JOURNAL (2002)
Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex
CL Mueller et al.
MOLECULAR AND CELLULAR BIOLOGY (2002)
Rad6-dependent ubiquitination of histone H2B in yeast
K Robzyk et al.
SCIENCE (2000)
分享论文
