相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Clinical metagenomics
Charles Y. Chiu et al.
NATURE REVIEWS GENETICS (2019)
New opportunities for managing acute and chronic lung infections
William O. C. M. Cookson et al.
NATURE REVIEWS MICROBIOLOGY (2018)
LiveKraken-real-time metagenomic classification of illumina data
Simon H. Tausch et al.
BIOINFORMATICS (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip
Arjang Hassibi et al.
NATURE BIOTECHNOLOGY (2018)
Improving saliva shotgun metagenomics by chemical host DNA depletion
Clarisse A. Marotz et al.
MICROBIOME (2018)
Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
Natacha Couto et al.
SCIENTIFIC REPORTS (2018)
De novo assembly of haplotype-resolved genomes with trio binning
Sergey Koren et al.
NATURE BIOTECHNOLOGY (2018)
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults
Charles Langelier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
K. Schmidt et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
Rapid Metagenomic Next-Generation Sequencing during an Investigation of Hospital-Acquired Human Parainfluenza Virus 3 Infections
Alexander L. Greninger et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2017)
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
Baofeng Jia et al.
NUCLEIC ACIDS RESEARCH (2017)
Simultaneous identification of Haemophilus influenzae and Haemophilus haemolyticus using real-time PCR
Erin P. Price et al.
FUTURE MICROBIOLOGY (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Application of next generation sequencing in clinical microbiology and infection prevention
Ruud H. Deurenberg et al.
JOURNAL OF BIOTECHNOLOGY (2017)
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
N. R. Faria et al.
NATURE (2017)
MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage
Yu Xia et al.
FRONTIERS IN MICROBIOLOGY (2017)
Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
Alex Orlek et al.
FRONTIERS IN MICROBIOLOGY (2017)
Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics
Kathryn M. Pendleton et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2017)
The role of Clostridium difficile in the paediatric and neonatal gut - a narrative review
E. A. Lees et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2016)
Centrifuge: rapid and sensitive classification of metagenomic sequences
Daehwan Kim et al.
GENOME RESEARCH (2016)
Antibiotic Resistance Patterns and Related Mobile Genetic Elements of Pneumococci and β-Hemolytic Streptococci in Thai Healthy Children
P. Tantivitayakul et al.
INDIAN JOURNAL OF MICROBIOLOGY (2016)
Depletion of Human DNA in Spiked Clinical Specimens for Improvement of Sensitivity of Pathogen Detection by Next-Generation Sequencing
Mohammad R. Hasan et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
Real-time, portable genome sequencing for Ebola surveillance
Joshua Quick et al.
NATURE (2016)
Use of MALDI Biotyper plus ClinProTools mass spectra analysis for correct identification of Streptococcus pneumoniae and Streptococcus mitisloralis
Jonathan H. K. Chen et al.
JOURNAL OF CLINICAL PATHOLOGY (2015)
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
Alexander L. Greninger et al.
GENOME MEDICINE (2015)
Microfluidic-based isolation of bacteria from whole blood for sepsis diagnostics
Sergey Zelenin et al.
BIOTECHNOLOGY LETTERS (2015)
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
Philip M. Ashton et al.
NATURE BIOTECHNOLOGY (2015)
Emerging Technologies for the Clinical Microbiology Laboratory
Blake W. Buchan et al.
CLINICAL MICROBIOLOGY REVIEWS (2014)
Aetiology of hospital-acquired pneumonia and trends in antimicrobial resistance
Virve I. Enne et al.
CURRENT OPINION IN PULMONARY MEDICINE (2014)
Variation on a theme; an overview of the Tn916/Tn 1545 family of mobile genetic elements in the oral and nasopharyngeal streptococci
Francesco Santoro et al.
FRONTIERS IN MICROBIOLOGY (2014)
Emergency management of community-acquired bacterial pneumonia: what is new since the 2007 Infectious Diseases Society of America/American Thoracic Society guidelines
Gregory J. Moran et al.
AMERICAN JOURNAL OF EMERGENCY MEDICINE (2013)
Diagnosis of Clostridium difficile Infection: an Ongoing Conundrum for Clinicians and for Clinical Laboratories
Carey-Ann D. Burnham et al.
CLINICAL MICROBIOLOGY REVIEWS (2013)
A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA
George R. Feehery et al.
PLOS ONE (2013)
Performance comparison of benchtop high-throughput sequencing platforms
Nicholas J. Loman et al.
NATURE BIOTECHNOLOGY (2012)
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
Nabil-Fareed Alikhan et al.
BMC GENOMICS (2011)
Application of TaqMan Low-Density Arrays for Simultaneous Detection of Multiple Respiratory Pathogens
Maja Kodani et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2011)
Tn916-like genetic elements: a diverse group of modular mobile elements conferring antibiotic resistance
Adam P. Roberts et al.
FEMS MICROBIOLOGY REVIEWS (2011)
Non-adherence to guidelines: an avoidable cause of failure of empirical antimicrobial therapy in the presence of difficult-to-treat bacteria
Frederic Garcin et al.
INTENSIVE CARE MEDICINE (2010)
British Thoracic Society guidelines for the management of community acquired pneumonia in adults: update 2009
W. S. Lim et al.
THORAX (2009)
Pneumolysin released during Streptococcus pneumoniae autolysis is a potent activator of intracellular oxygen radical production in neutrophils
Anna Martner et al.
INFECTION AND IMMUNITY (2008)
Community-acquired Streptococcus mitis meningitis: a case report
Selda Sayin Kutlu et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2008)
Quantitative detection of Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis in lower respiratory tract samples by real-time PCR
Madeleine Kais et al.
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2006)
Laboratory diagnosis of lower respiratory tract infections: Controversy and conundrums
KC Carroll
JOURNAL OF CLINICAL MICROBIOLOGY (2002)
Sulfonamide resistance in Haemophilus influenzae mediated by acquisition of sul2 or a short insertion in chromosomal folP
VI Enne et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2002)
Role of serial routine microbiologic culture results in the initial management of ventilator-associated pneumonia
J Hayon et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2002)
分享论文
