4.4 Article

Rare coral under the genomic microscope: timing and relationships among Hawaiian Montipora

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Genome analysis of the rice coral Montipora capitata

Alexander Shumaker et al.

SCIENTIFIC REPORTS (2019)

Article Multidisciplinary Sciences

Physiological responses of hydroponically-grown Japanese mint under nutrient deficiency

Chananchida Janpen et al.

Article Biochemistry & Molecular Biology

The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte

Mark N. Puttick et al.

CURRENT BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Coral hybridization or phenotypic variation? Genomic data reveal gene flow between Porites lobata and P-Cornpressa

Z. H. Forsman et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)

Article Multidisciplinary Sciences

A genomic glance through the fog of plasticity and diversification in Pocillopora

Erika C. Johnston et al.

SCIENTIFIC REPORTS (2017)

Article Biochemistry & Molecular Biology

RAD sequencing enables unprecedented phylogenetic resolution and objective species delimitation in recalcitrant divergent taxa

Santiago Herrera et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)

Article Evolutionary Biology

Rarity and Incomplete Sampling in DNA-Based Species Delimitation

Dirk Ahrens et al.

SYSTEMATIC BIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Differences in Bacterial Community Structure in Two Color Morphs of the Hawaiian Reef Coral Montipora capitata

Amanda Shore-Maggio et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Evolutionary Biology

Detection and Polarization of Introgression in a Five-Taxon Phylogeny

James B. Pease et al.

SYSTEMATIC BIOLOGY (2015)

Article Evolutionary Biology

Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data

Alexander Nater et al.

SYSTEMATIC BIOLOGY (2015)

Article Mathematics, Interdisciplinary Applications

A Guide to Phylogenetic Reconstruction Using Heterogeneous Models-A Case Study from the Root of the Placental Mammal Tree

Raymond J. Moran et al.

COMPUTATION (2015)

Article Biochemical Research Methods

Quartet Inference from SNP Data Under the Coalescent Model

Julia Chifman et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Review Plant Sciences

DNA- based species delimitation in algae

Frederik Leliaert et al.

EUROPEAN JOURNAL OF PHYCOLOGY (2014)

Editorial Material Biochemistry & Molecular Biology

Demystifying the RAD fad

Jonathan B. Puritz et al.

MOLECULAR ECOLOGY (2014)

Article Multidisciplinary Sciences

The Naked Coral'' Hypothesis Revisited - Evidence for and Against Scleractinian Monophyly

Marcelo V. Kitahara et al.

PLOS ONE (2014)

Article Evolutionary Biology

Species Delimitation using Genome-Wide SNP Data

Adam D. Leache et al.

SYSTEMATIC BIOLOGY (2014)

Article Biochemical Research Methods

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Remco Bouckaert et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

Eiichi Shoguchi et al.

CURRENT BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Heterogeneous Models Place the Root of the Placental Mammal Phylogeny

Claire C. Morgan et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

ezRAD: a simplified method for genomic genotyping in non-model organisms

Robert J. Toonen et al.

Article Evolutionary Biology

The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis

Marcelo V. Kitahara et al.

INVERTEBRATE SYSTEMATICS (2012)

Article Biochemistry & Molecular Biology

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Alexei J. Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

David Bryant et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record

Eunji Park et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)

Article Multidisciplinary Sciences

Threatened Reef Corals of the World

Danwei Huang

PLOS ONE (2012)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Marine & Freshwater Biology

Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments

M. R. Gaither et al.

CORAL REEFS (2011)

Article Biochemistry & Molecular Biology

Testing for Ancient Admixture between Closely Related Populations

Eric Y. Durand et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Biochemistry & Molecular Biology

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Biochemical Research Methods

Parallelization of the MAFFT multiple sequence alignment program

Kazutaka Katoh et al.

BIOINFORMATICS (2010)

Article Zoology

Rethinking the Phylogeny of Scleractinian Corals: A Review of Morphological and Molecular Data

Ann F. Budd et al.

INTEGRATIVE AND COMPARATIVE BIOLOGY (2010)

Article Multidisciplinary Sciences

A Draft Sequence of the Neandertal Genome

Richard E. Green et al.

SCIENCE (2010)

Article Biology

Evolutionarily distinctive species often capture more phylogenetic diversity than expected

David W. Redding et al.

JOURNAL OF THEORETICAL BIOLOGY (2008)

Article Multidisciplinary Sciences

Some Rare Indo-Pacific Coral Species Are Probable Hybrids

Zoe T. Richards et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

The archaebacterial origin of eukaryotes

Cymon J. Cox et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Evolutionary Biology

Delimiting species in recent radiations

H. Bradley Shaffer et al.

SYSTEMATIC BIOLOGY (2007)

Article Evolutionary Biology

Inconsistency of phylogenetic estimates from concatenated data under coalescence

Laura Salter Kubatko et al.

SYSTEMATIC BIOLOGY (2007)

Article Multidisciplinary Sciences

Naked corals: Skeleton loss in Scleractinia

Monica Medina et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Testing the utility of internally transcribed spacer sequences in coral phylogenetics

SV Vollmer et al.

MOLECULAR ECOLOGY (2004)

Article Marine & Freshwater Biology

Patterns of evolution in the scleractinian coral genus Montipora (Acroporidae)

MJH van Oppen et al.

MARINE BIOLOGY (2004)

Article Evolutionary Biology

Modeling compositional heterogeneity

PG Foster

SYSTEMATIC BIOLOGY (2004)

Review Geosciences, Multidisciplinary

The evolution of modern corals and their early history

GD Stanley

EARTH-SCIENCE REVIEWS (2003)

Article Evolutionary Biology

Divergence time and evolutionary rate estimation with multilocus data

JL Thorne et al.

SYSTEMATIC BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Performance of a divergence time estimation method under a probabilistic model of rate evolution

H Kishino et al.

MOLECULAR BIOLOGY AND EVOLUTION (2001)