期刊
GIGASCIENCE
卷 8, 期 5, 页码 -出版社
OXFORD UNIV PRESS
DOI: 10.1093/gigascience/giz036
关键词
Carya; pecan; Chinese hickory; whole-genome sequence; adaptive evolution; nutritional value; genetic improvement
资金
- National Key R&D Program of China [2018YFD1000604]
- 863 Program from the Chinese Ministry of Science and Technology [2013AA102605]
- National Science Foundation of China [31470682, 31670682, 31570666]
- Zhejiang Agriculture (fruit) New Variety Breeding Major Science and Technology Special [2016C02052-13]
- Teacher Professional Development Project of Domestic Visiting Scholar in Zhejiang Province [FX2015040]
Background: Pecan (Carya illinoinensis) and Chinese hickory (C. cathayensis) are important commercially cultivated nut trees in the genus Carya (Juglandaceae), with high nutritional value and substantial health benefits. Results: We obtained >187.22 and 178.87 gigabases of sequence, and similar to 288x and 248x genome coverage, to a pecan cultivar (Pawnee) and a domesticated Chinese hickory landrace (ZAFU-1), respectively. The total assembly size is 651.31 megabases (Mb) for pecan and 706.43 Mb for Chinese hickory. Two genome duplication events before the divergence from walnut were found in these species. Gene family analysis highlighted key genes in biotic and abiotic tolerance, oil, polyphenols, essential amino acids, and B vitamins. Further analyses of reduced-coverage genome sequences of 16 Carya and 2 Juglans species provide additional phylogenetic perspective on crop wild relatives. Conclusions: Cooperative characterization of these valuable resources provides a window to their evolutionary development and a valuable foundation for future crop improvement.
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