4.6 Article

Optimizing de novo genome assembly from PCR-amplified metagenomes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

UniProt: a worldwide hub of protein knowledge

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemical Research Methods

Versatile genome assembly evaluation with QUAST-LG

Alla Mikheenko et al.

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk et al.

GENOME RESEARCH (2017)

Article Biotechnology & Applied Microbiology

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Robert M. Bowers et al.

NATURE BIOTECHNOLOGY (2017)

Article Multidisciplinary Sciences

Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia

Roland Hatzenpichler et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Microbiology

Status of the Archaeal and Bacterial Census: an Update

Patrick D. Schloss et al.

Article Multidisciplinary Sciences

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems

David Burstein et al.

NATURE COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics

Christian Rinke et al.

Article Microbiology

A new view of the tree of life

Laura A. Hug et al.

NATURE MICROBIOLOGY (2016)

Article Biochemical Research Methods

BFC: correcting Illumina sequencing errors

Heng Li

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Article Multidisciplinary Sciences

Complex archaea that bridge the gap between prokaryotes and eukaryotes

Anja Spang et al.

NATURE (2015)

Article Multidisciplinary Sciences

Structure and function of the global ocean microbiome

Shinichi Sunagawa et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Anvi'o: an advanced analysis and visualization platformfor 'omics data

A. Murat Eren et al.

Article Multidisciplinary Sciences

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

Bas E. Dutilh et al.

NATURE COMMUNICATIONS (2014)

Article Biotechnology & Applied Microbiology

Sequencing platform and library preparation choices impact viral metagenomes

Sergei A. Solonenko et al.

BMC GENOMICS (2013)

Article Biochemical Research Methods

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Sergey Nurk et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2013)

Article Multidisciplinary Sciences

Genomic variation landscape of the human gut microbiome

Siegfried Schloissnig et al.

NATURE (2013)

Article Multidisciplinary Sciences

Insights into the phylogeny and coding potential of microbial dark matter

Christian Rinke et al.

NATURE (2013)

Article Multidisciplinary Sciences

Activity of abundant and rare bacteria in a coastal ocean

Barbara J. Campbell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Environmental Sciences

A simple and efficient method for concentration of ocean viruses by chemical flocculation

Seth G. John et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2011)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Review Multidisciplinary Sciences

The microbial engines that drive Earth's biogeochemical cycles

Paul G. Falkowski et al.

SCIENCE (2008)

Review Microbiology

Marine viruses - major players in the global ecosystem

Curtis A. Suttle

NATURE REVIEWS MICROBIOLOGY (2007)