相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1
Mohammad Hamidian et al.
MICROBIAL GENOMICS (2019)
A critical re-evaluation of multilocus sequence typing (MLST) efforts in Wolbachia
Christoph Bleidorn et al.
FEMS MICROBIOLOGY ECOLOGY (2018)
Predominance of international clone 2 OXA-23-producing-Acinetobacter baumannii clinical isolates in Greece, 2015: results of a nationwide study
Spyros Pournaras et al.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2017)
Problems with the Oxford Multilocus Sequence Typing Scheme for Acinetobacter baumannii: Do Sequence Type 92 (ST92) and ST109 Exist?
Mohammad Hamidian et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2017)
Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii
Paul G. Higgins et al.
PLOS ONE (2017)
Utility of Whole-Genome Sequencing in Characterizing Acinetobacter Epidemiology and Analyzing Hospital Outbreaks
Margaret A. Fitzpatrick et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
Use of Comparative Genomics To Characterize the Diversity of Acinetobacter baumannii Surveillance Isolates in a Health Care Institution
Lalena Wallace et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2016)
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
Bruno Ribeiro-Goncalves et al.
NUCLEIC ACIDS RESEARCH (2016)
Head-to-Head Comparison of Two Multi-Locus Sequence Typing (MLST) Schemes for Characterization of Acinetobacter baumannii Outbreak and Sporadic Isolates
Franziska Tomaschek et al.
PLOS ONE (2016)
A glimpse into evolution and dissemination of multidrug-resistant Acinetobacter baumannii isolates in East Asia: a comparative genomics study
Ye Feng et al.
SCIENTIFIC REPORTS (2016)
Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
Mark B. Schultz et al.
MICROBIAL GENOMICS (2016)
Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1
Kathryn Holt et al.
MICROBIAL GENOMICS (2016)
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
Agnes P. Chan et al.
GENOME BIOLOGY (2015)
Genomic Epidemiology of Klebsiella pneumoniae in Italy and Novel Insights into the Origin and Global Evolution of Its Resistance to Carbapenem Antibiotics
Stefano Gaiarsa et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)
Expanded microbial genome coverage and improved protein family annotation in the COG database
Michael Y. Galperin et al.
NUCLEIC ACIDS RESEARCH (2015)
Complete genome sequence of hypervirulent and outbreak-associated Acinetobacter baumannii strain LAC-4: epidemiology, resistance genetic determinants and potential virulence factors
Hong-Yu Ou et al.
SCIENTIFIC REPORTS (2015)
Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage
Jason W. Sahl et al.
SCIENTIFIC REPORTS (2015)
RDP4: Detection and analysis of recombination patterns in virus genomes
Darren P. Martin et al.
VIRUS EVOLUTION (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
SHORT REPORT Characterization of a novel international clonal complex (CC32) of Acinetobacter baumannii with epidemic potential
G. J. Da Silva et al.
EPIDEMIOLOGY AND INFECTION (2014)
Single-Locus-Sequence-Based Typing of blaOXA-51-like Genes for Rapid Assignment of Acinetobacter baumannii Clinical Isolates to International Clonal Lineages
Spyros Pournaras et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Genomic Definition of Hypervirulent and Multidrug-Resistant Klebsiella pneumoniae Clonal Groups
Suzanne Bialek-Davenet et al.
EMERGING INFECTIOUS DISEASES (2014)
Global evolution of multidrug-resistant Acinetobacter baumannii clonal lineages
Raffaele Zarrilli et al.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2013)
MLST revisited: the gene-by-gene approach to bacterial genomics
Martin C. J. Maiden et al.
NATURE REVIEWS MICROBIOLOGY (2013)
Evolution of a Pathogen: A Comparative Genomics Analysis Identifies a Genetic Pathway to Pathogenesis in Acinetobacter
Jason W. Sahl et al.
PLOS ONE (2013)
Variation in the Complex Carbohydrate Biosynthesis Loci of Acinetobacter baumannii Genomes
Johanna J. Kenyon et al.
PLOS ONE (2013)
TreeCmp: Comparison of Trees in Polynomial Time
Damian Bogdanowicz et al.
EVOLUTIONARY BIOINFORMATICS (2012)
Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
Keith A. Jolley et al.
MICROBIOLOGY-SGM (2012)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme
A. Di Popolo et al.
CLINICAL MICROBIOLOGY AND INFECTION (2011)
A Model for the Effect of Homologous Recombination on Microbial Diversification
James R. Doroghazi et al.
GENOME BIOLOGY AND EVOLUTION (2011)
Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study
E. Carretto et al.
INFECTION GENETICS AND EVOLUTION (2011)
OXA-23-producing Acinetobacter baumannii: a new hotspot of diversity in Rio de Janeiro?
Filipa Grosso et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2011)
Clonal Diversity of Nosocomial Epidemic Acinetobacter baumannii Strains Isolated in Spain
Pilar Villalon et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2011)
Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii
Evan S. Snitkin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Keith A. Jolley et al.
BMC BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Characterization of Epidemiologically Unrelated Acinetobacter baumannii Isolates from Four Continents by Use of Multilocus Sequence Typing, Pulsed-Field Gel Electrophoresis, and Sequence-Based Typing of blaOXA-51-like Genes
Ahmed Hamouda et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2010)
Molecular Epidemiology of Multidrug-Resistant Acinetobacter baumannii in a Tertiary Care Hospital in Naples, Italy, Shows the Emergence of a Novel Epidemic Clone
Maria Giannouli et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
The Population Structure of Acinetobacter baumannii: Expanding Multiresistant Clones from an Ancestral Susceptible Genetic Pool
Laure Diancourt et al.
PLOS ONE (2010)
CAIcal:: A combined set of tools to assess codon usage adaptation
Pere Puigbo et al.
BIOLOGY DIRECT (2008)
Molecular epidemiology of clinical Acinetobacter baumannii and Acinetobacter genomic species 13TU isolates using a multilocus sequencing typing scheme
H. Wisplinghoff et al.
CLINICAL MICROBIOLOGY AND INFECTION (2008)
An increasing threat in hospitals:: multidrug-resistant Acinetobacter baumannii
Lenie Dijkshoorn et al.
NATURE REVIEWS MICROBIOLOGY (2007)
Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii
SG Bartual et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals
H van Dessel et al.
RESEARCH IN MICROBIOLOGY (2004)
eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
EJ Feil et al.
JOURNAL OF BACTERIOLOGY (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
mlstdbNet - distributed multi-locus sequence typing (MLST) databases
KA Jolley et al.
BMC BIOINFORMATICS (2004)
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
ACE Darling et al.
GENOME RESEARCH (2004)
A likelihood approach to estimating phylogeny from discrete morphological character data
PO Lewis
SYSTEMATIC BIOLOGY (2001)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
