相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Improving RNA nearest neighbor parameters for helices by going beyond the two-state model
Aleksandar Spasic et al.
NUCLEIC ACIDS RESEARCH (2018)
Analysis of RNA nearest neighbor parameters reveals interdependencies and quantifies the uncertainty in RNA secondary structure prediction
Jeffrey Zuber et al.
RNA (2018)
A sensitivity analysis of RNA folding nearest neighbor parameters identifies a subset of free energy parameters with the greatest impact on RNA secondary structure prediction
Jeffrey Zuber et al.
NUCLEIC ACIDS RESEARCH (2017)
RNA-guided isomerization of uridine to pseudouridine-pseudouridylation
Yi-Tao Yu et al.
RNA BIOLOGY (2014)
A Decade of Riboswitches
Alexander Serganov et al.
CELL (2013)
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
Christine E. Hajdin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters
Jonathan L. Chen et al.
BIOCHEMISTRY (2012)
A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more
Elena Rivas et al.
RNA (2012)
ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
Thermodynamic Characterization of RNA Triloops
Praneetha Thulasi et al.
BIOCHEMISTRY (2010)
RNAstructure: software for RNA secondary structure prediction and analysis
Jessica S. Reuter et al.
BMC BIOINFORMATICS (2010)
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
Douglas H. Turner et al.
NUCLEIC ACIDS RESEARCH (2010)
Computational approaches for RNA energy parameter estimation
Mirela Andronescu et al.
RNA (2010)
ProbKnot: Fast prediction of RNA secondary structure including pseudoknots
Stanislav Bellaousov et al.
RNA (2010)
A two-length-scale polymer theory for RNA loop free energies and helix stacking
Daniel P. Aalberts et al.
RNA (2010)
3′ Terminal Nucleotides Determine Thermodynamic Stabilities of Mismatches at the Ends of RNA Helices
Koree Clanton-Arrowood et al.
BIOCHEMISTRY (2008)
Let me count the ways: Mechanisms of gene regulation by miRNAs and siRNAs
Ligang Wu et al.
MOLECULAR CELL (2008)
Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops
Joshua M. Blose et al.
BIOCHEMISTRY (2007)
Predicting helical coaxial stacking in RNA multibranch loops
Rahul Tyagi et al.
RNA (2007)
A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation
Zhi John Lu et al.
NUCLEIC ACIDS RESEARCH (2006)
CONTRAfold: RNA secondary structure prediction without physics-based models
Chuong B. Do et al.
BIOINFORMATICS (2006)
Revolutions in RNA secondary structure prediction
David H. Mathews
JOURNAL OF MOLECULAR BIOLOGY (2006)
Stability of 3' double nucleotide overhangs that model the 3' ends of siRNA
AS O'Toole et al.
RNA (2005)
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization
DH Mathews
RNA (2004)
Sfold web server for statistical folding and rational design of nucleic acids
Y Ding et al.
NUCLEIC ACIDS RESEARCH (2004)
RNA folding and unfolding
B Onoa et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
DH Mathews et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
A statistical sampling algorithm for RNA secondary structure prediction
Y Ding et al.
NUCLEIC ACIDS RESEARCH (2003)
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker
NUCLEIC ACIDS RESEARCH (2003)
RNAsoft:: a suite of RNA secondary structure prediction and design software tools
M Andronescu et al.
NUCLEIC ACIDS RESEARCH (2003)
The chemical repertoire of natural ribozymes
JA Doudna et al.
NATURE (2002)
Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops
DH Mathews et al.
BIOCHEMISTRY (2002)
Recent insights on RNA folding mechanisms from catalytic RNA
SA Woodson
CELLULAR AND MOLECULAR LIFE SCIENCES (2000)
分享论文
