相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Affinity-based capture and identification of protein effectors of the growth regulator ppGpp
Boyuan Wang et al.
NATURE CHEMICAL BIOLOGY (2019)
DksA and ppGpp Regulate the sigma(S) Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP
Mary E. Girard et al.
JOURNAL OF BACTERIOLOGY (2018)
Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli
Yong Zhang et al.
MBIO (2018)
Transcriptional Responses to ppGpp and DksA
Richard L. Gourse et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 72 (2018)
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
Ingrid M. Keseler et al.
NUCLEIC ACIDS RESEARCH (2017)
Dissection of the molecular circuitry controlling virulence in Francisella tularensis
Bonnie J. Cuthbert et al.
GENES & DEVELOPMENT (2017)
Roles of Transcriptional and Translational Control Mechanisms in Regulation of Ribosomal Protein Synthesis in Escherichia coli
Hector L. Burgos et al.
JOURNAL OF BACTERIOLOGY (2017)
ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response
Wilma Ross et al.
MOLECULAR CELL (2016)
Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters
Jared T. Winkelman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
SuhB Associates with Nus Factors To Facilitate 30S Ribosome Biogenesis in Escherichia coli
Navjot Singh et al.
MBIO (2016)
Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Haitian Fan et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Recent functional insights into the role of (p)ppGpp in bacterial physiology
Vasili Hauryliuk et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Structural and Functional Insights into the Mode of Action of a Universally Conserved Obg GTPase
Boya Feng et al.
PLOS BIOLOGY (2014)
A Proximal Promoter Element Required for Positive Transcriptional Control by Guanosine Tetraphosphate and DksA Protein during the Stringent Response
Bertil Gummesson et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
The Magic Spot: A ppGpp Binding Site on E. coli RNA Polymerase Responsible for Regulation of Transcription Initiation
Wilma Ross et al.
MOLECULAR CELL (2013)
Positive allosteric feedback regulation of the stringent response enzyme RelA by its product
Viktoriya Shyp et al.
EMBO REPORTS (2012)
Crystal structure analysis of the translation factor RF3 (release factor 3)
Kiyohito Kihira et al.
FEBS LETTERS (2012)
Direct Regulation of GTP Homeostasis by (p)ppGpp: A Critical Component of Viability and Stress Resistance
Allison Kriel et al.
MOLECULAR CELL (2012)
Binding Mechanism of Metal•NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases
Richard U. Rymer et al.
STRUCTURE (2012)
Structural Basis for Promoter-10 Element Recognition by the Bacterial RNA Polymerase σ Subunit
Andrey Feklistov et al.
CELL (2011)
Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase
Usheer Kanjee et al.
EMBO JOURNAL (2011)
Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the 'feast to famine' gradient in Escherichia coli
Matthew F. Traxler et al.
MOLECULAR MICROBIOLOGY (2011)
The dksA promoter is negatively feedback regulated by DksA and ppGpp
Pete Chandrangsu et al.
MOLECULAR MICROBIOLOGY (2011)
X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides
Michael L. Gleghorn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA
Justin J. Lemke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
ppGpp inhibits the activity of Escherichia coli DnaG primase
Monika Maciag et al.
PLASMID (2010)
Similar and Divergent Effects of ppGpp and DksA Deficiencies on Transcription in Escherichia coli
Anna Aberg et al.
JOURNAL OF BACTERIOLOGY (2009)
DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade
Justin J. Lemke et al.
MOLECULAR MICROBIOLOGY (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli
Matthew F. Traxler et al.
MOLECULAR MICROBIOLOGY (2008)
Regulation of the fimB promoter:: a case of differential regulation by ppGpp and DksA in vivo
Anna Aberg et al.
MOLECULAR MICROBIOLOGY (2008)
Advances in bacterial promoter recognition and its control by factors that do not bind DNA
Shanil P. Haugen et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Transcription profiling of the stringent response in Escherichia coli
Tim Durfee et al.
JOURNAL OF BACTERIOLOGY (2008)
Effects of DksA, GreA, and GreB on transcription initiation: Insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase
Steven T. Rutherford et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
A basal promoter element recognized by free RNA polymerase σ subunit determines promoter recognition by RNA polymerase holoenzyme
Andrey Feklistov et al.
MOLECULAR CELL (2006)
rRNA promoter regulation by nonoptimal binding of a region 1.2: An additional recognition element for RNA polymerase
Shanil P. Haugen et al.
CELL (2006)
DksA potentiates direct activation of amino acid promoters by ppGpp
BJ Paul et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
BJ Paul et al.
CELL (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Control of rRNA expression by small molecules is dynamic and nonredundant
HD Murray et al.
MOLECULAR CELL (2003)
Regulation of rRNA transcription correlates with nucleoside triphosphate sensing
MM Barker et al.
JOURNAL OF BACTERIOLOGY (2001)
Mechanism of regulation of transcription initiation by ppGpp.: I.: Effects of ppGpp on transcription initiation in vivo and in vitro
MM Barker et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP
MM Barker et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Coupling of flagellar gene expression to flagellar assembly in salmonella enterica serovar typhimurium and Escherichia coli
GS Chilcott et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)