期刊
NUCLEIC ACIDS RESEARCH
卷 47, 期 W1, 页码 W566-W570出版社
OXFORD UNIV PRESS
DOI: 10.1093/nar/gkz386
关键词
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资金
- National Institutes of Health (NIH)/National Library of Medicine (NLM)/National Human Genome Research Institute (NHGRI) [R01LM012895-01]
- NIH/NLM/NHGRI [R01LM012895-01]
We present Doc2Hpo, an interactive web application that enables interactive and efficient phenotype concept curation from clinical text with automated concept normalization using the Human Phenotype Ontology (HPO). Users can edit the HPO concepts automatically extracted by Doc2Hpo in real time, and export the extracted HPO concepts into gene prioritization tools. Our evaluation showed that Doc2Hpo significantly reduced manual effort while achieving high accuracy in HPO concept curation. Doc2Hpo is freely available at https://impact2.dbmi.columbia. edu/doc2hpo/. The source code is available at https://github.com/stormliucong/doc2hpo for local installation for protected health data.
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