相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Mechanism and regulation of DNA damage recognition in nucleotide excision repair
Masayuki Kusakabe et al.
GENES AND ENVIRONMENT (2019)
Enhanced spontaneous DNA twisting/bending fluctuations unveiled by fluorescence lifetime distributions promote mismatch recognition by the Rad4 nucleotide excision repair complex
Sagnik Chakraborty et al.
NUCLEIC ACIDS RESEARCH (2018)
Formation of UV-induced DNA damage contributing to skin cancer development
Jean Cadet et al.
PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2018)
Structural basis of RNA polymerase I stalling at UV light-induced DNA damage
Marta Sanz-Murillo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Lesion Sensing during Initial Binding by Yeast XPC/Rad4: Toward Predicting Resistance to Nucleotide Excision Repair
Hong Mu et al.
CHEMICAL RESEARCH IN TOXICOLOGY (2018)
UV-Induced DNA Damage and Mutagenesis in Chromatin
Peng Mao et al.
PHOTOCHEMISTRY AND PHOTOBIOLOGY (2017)
Structural basis for the initiation of eukaryotic transcription-coupled DNA repair
Jun Xu et al.
NATURE (2017)
Conformational polymorphism or structural invariance in DNA photoinduced lesions: implications for repair rates
Francois Dehez et al.
NUCLEIC ACIDS RESEARCH (2017)
The Cartography of UV-induced DNA Damage Formation and DNA Repair
Jinchuan Hu et al.
PHOTOCHEMISTRY AND PHOTOBIOLOGY (2017)
Polder maps: improving OMIT maps by excluding bulk solvent
Dorothee Liebschner et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2017)
Nucleotide Excision Repair Lesion-Recognition Protein Rad4 Captures a Pre-Flipped Partner Base in a Benzo[a]pyrene-Derived DNA Lesion: How Structure Impacts the Binding Pathway
Hong Mu et al.
CHEMICAL RESEARCH IN TOXICOLOGY (2017)
Xeroderma pigmentosum group C sensor: unprecedented recognition strategy and tight spatiotemporal regulation
Marjo-Riitta Puumalainen et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2016)
Photobiological Origins of the Field of Genomic Maintenance
Ann Ganesan et al.
PHOTOCHEMISTRY AND PHOTOBIOLOGY (2016)
Molecular mechanisms of DNA damage recognition for mammalian nucleotide excision repair
Kaoru Sugasawa
DNA REPAIR (2016)
Single-Molecule Imaging Reveals that Rad4 Employs a Dynamic DNA Damage Recognition Process
Muwen Kong et al.
MOLECULAR CELL (2016)
Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes
Dilmi Perera et al.
NATURE (2016)
Deficient Nucleotide Excision Repair in Squamous Cell Carcinoma Cells
Tiffany K. Dong et al.
PHOTOCHEMISTRY AND PHOTOBIOLOGY (2016)
Nucleotide excision repair by dual incisions in plants
Fazile Canturk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis
Sheera Adar et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complex
Yogambigai Velmurugu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Repair of UVB-induced DNA damage is reduced in melanoma due to low XPC and global genome repair
Timothy Budden et al.
ONCOTARGET (2016)
Nucleotide excision repair deficiency in melanoma in response to UVA
Heather C. Murray et al.
EXPERIMENTAL HEMATOLOGY & ONCOLOGY (2016)
Recognition of Damaged DNA for Nucleotide Excision Repair: A Correlated Motion Mechanism with a Mismatched cis-syn Thymine Dimer Lesion
Hong Mu et al.
BIOCHEMISTRY (2015)
Alpha Space: Fragment-Centric Topographical Mapping To Target Protein-Protein Interaction Interfaces
David Rooklin et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2015)
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
James A. Maier et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
Tripartite DNA Lesion Recognition and Verification by XPC, TFIIH, and XPA in Nucleotide Excision Repair
Chia-Lung Li et al.
MOLECULAR CELL (2015)
Architecture of the human XPC DNA repair and stem cell coactivator complex
Elisa T. Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Kinetic gating mechanism of DNA damage recognition by Rad4/XPC
Xuejing Chen et al.
NATURE COMMUNICATIONS (2015)
Beyond Xeroderma Pigmentosum: DNA Damage and Repair in an Ecological Context. A Tribute to James E. Cleaver
Deneb Karentz
PHOTOCHEMISTRY AND PHOTOBIOLOGY (2015)
Integrating protein structural dynamics and evolutionary analysis with Bio3D
Lars Skjrven et al.
BMC BIOINFORMATICS (2014)
Structural Biology of DNA (6-4) Photoproducts Formed by Ultraviolet Radiation and Interactions with Their Binding Proteins
Hideshi Yokoyama et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2014)
Transcription bypass of DNA lesions enhances cell survival but attenuates transcription coupled DNA repair
Wentao Li et al.
NUCLEIC ACIDS RESEARCH (2014)
Single-molecule analysis reveals human UV-damaged DNA-binding protein (UV-DDB) dimerizes on DNA via multiple kinetic intermediates
Harshad Ghodke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Structure of a double-stranded DNA (64) photoproduct in complex with the 64M-5 antibody Fab
Hideshi Yokoyama et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2013)
Human and yeast DNA damage recognition complexes bind with high affinity DNA structures mimicking in size transcription bubble
Yuliya S. Krasikova et al.
JOURNAL OF MOLECULAR RECOGNITION (2013)
Nucleotide Excision Repair in Eukaryotes
Orlando D. Schaerer
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)
Structural, energetic and dynamic properties of guanine(C8)-thymine(N3) cross-links in DNA provide insights on susceptibility to nucleotide excision repair
Shuang Ding et al.
NUCLEIC ACIDS RESEARCH (2012)
Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies
Hong Mu et al.
NUCLEIC ACIDS RESEARCH (2012)
Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair
Joanne I. Yeh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Multiple DNA damage recognition factors involved in mammalian nucleotide excision repair
K. Sugasawa
BIOCHEMISTRY-MOSCOW (2011)
Wavelength dependence of ultraviolet radiation-induced DNA damage as determined by laser irradiation suggests that cyclobutane pyrimidine dimers are the principal DNA lesions produced by terrestrial sunlight
Ahmad Besaratinia et al.
FASEB JOURNAL (2011)
Integration, scaling, space-group assignment and post-refinement
Wolfgang Kabsch
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Elucidation of Spore-Photoproduct Formation by Isotope Labeling
Gengjie Lin et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)
Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair
Martijn S. Luijsterburg et al.
JOURNAL OF CELL BIOLOGY (2010)
Distant Neighbor Base Sequence Context Effects in Human Nucleotide Excision Repair of a Benzo[a]pyrene-derived DNA Lesion
Yuqin Cai et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
An Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies
Kun Song et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2009)
Differential Nucleotide Excision Repair Susceptibility of Bulky DNA Adducts in Different Sequence Contexts: Hierarchies of Recognition Signals
Yuqin Cai et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
The Sequence Dependence of Human Nucleotide Excision Repair Efficiencies of Benzo[a]pyrene-derived DNA Lesions: Insights into the Structural Factors that Favor Dual Incisions
Konstantin Kropachev et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Two-Step Recognition of DNA Damage for Mammalian Nucleotide Excision Repair: Directional Binding of the XPC Complex and DNA Strand Scanning
Kaoru Sugasawa et al.
MOLECULAR CELL (2009)
The DNA-damage response in human biology and disease
Stephen P. Jackson et al.
NATURE (2009)
Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity
James E. Cleaver et al.
NATURE REVIEWS GENETICS (2009)
Crystal Structure and Mechanism of a DNA (6-4) Photolyase
Melanie J. Maul et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2008)
Structural Basis of UV DNA-Damage Recognition by the DDB1-DDB2 Complex
Andrea Scrima et al.
CELL (2008)
Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: Enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair
Yuqin Cai et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
DNA repair triggered by sensors of helical dynamics
Olivier Maillard et al.
TRENDS IN BIOCHEMICAL SCIENCES (2007)
Recognition of DNA damage by the Rad4 nucleotide excision repair protein
Jung-Hyun Min et al.
NATURE (2007)
Phaser crystallographic software
Airlie J. McCoy et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: A complex genotype-phenotype relationship
K. H. Kraemer et al.
NEUROSCIENCE (2007)
CPD damage recognition by transcribing RNA polymerase II
Florian Brueckner et al.
SCIENCE (2007)
Biochemical and structural domain analysis of xeroderma pigmentosum complementation group C protein
Christopher G. Bunick et al.
BIOCHEMISTRY (2006)
Pre-steady-state binding of damaged DNA by XPC-hHR23B reveals a kinetic mechanism for damage discrimination
KS Trego et al.
BIOCHEMISTRY (2006)
Molecular mechanisms of mammalian global genome nucleotide excision repair
LCJ Gillet et al.
CHEMICAL REVIEWS (2006)
DNA quality control by conformational readout on the undamaged strand of the double helix
T Buterin et al.
CHEMISTRY & BIOLOGY (2005)
Centrin 2 stimulates nucleotide excision repair by interacting with xeroderma pigmentosum group C protein
R Nishi et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex
K Sugasawa et al.
CELL (2005)
In vivo recruitment of XPC to UV-induced cyclobutane pyrimidine dimers by the DDB2 gene product
ME Fitch et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
The comings and goings of nucleotide excision repair factors on damaged DNA
T Riedl et al.
EMBO JOURNAL (2003)
Crystal structure of a DNA decamer containing a cis-syn thymine dimer
H Park et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery
NE Geacintov et al.
BIOPOLYMERS (2002)
The carboxy-terminal domain of the XPC protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH
A Uchida et al.
DNA REPAIR (2002)
The XPC-HR23B complex displays high affinity and specificity for damaged DNA in a true-equilibrium fluorescence assay
T Hey et al.
BIOCHEMISTRY (2002)
A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex
K Sugasawa et al.
DNA REPAIR (2002)
Cyclobutane pyrimidine dimers are responsible for the vast majority of mutations induced by UVB irradiation in mammalian cells
YH You et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
How nucleotide excision repair protects against cancer
EC Friedberg
NATURE REVIEWS CANCER (2001)
Sequential assembly of the nucleotide excision repair factors in vivo
M Volker et al.
MOLECULAR CELL (2001)
Diversity of the damage recognition step in the global genomic nucleotide excision repair in vitro
R Kusumoto et al.
MUTATION RESEARCH-DNA REPAIR (2001)
A multistep damage recognition mechanism for global genomic nucleotide excision repair
K Sugasawa et al.
GENES & DEVELOPMENT (2001)
Stable binding of human XPC complex to irradiated DNA confers strong discrimination for damaged sites
D Batty et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Crystal structure of the 64M-2 antibody Fab fragment in complex with a DNA dT(6-4)T photoproduct formed by ultraviolet radiation
H Yokoyama et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
The xeroderma pigmentosum group C protein complex XPC-HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA
M Yokoi et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
分享论文
