相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency
Kenjiro Adachi et al.
CELL STEM CELL (2018)
Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures
Federico Comoglio et al.
GENOME RESEARCH (2018)
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
Ralph Stadhouders et al.
NATURE GENETICS (2018)
Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
Bo Gu et al.
SCIENCE (2018)
Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
Won-Ki Cho et al.
SCIENCE (2018)
Contrasting epigenetic states of heterochromatin in the different types of mouse pluripotent stem cells
Matteo Tosolini et al.
SCIENTIFIC REPORTS (2018)
Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition
Clara Lopes Novo et al.
CELL REPORTS (2018)
Combinatorial Smad2/3 Activities Downstream of Nodal Signaling Maintain Embryonic/Extra-Embryonic Cell Identities during Lineage Priming
Anna D. Senft et al.
CELL REPORTS (2018)
Developmental enhancers and chromosome topology
Eileen E. M. Furlong et al.
SCIENCE (2018)
Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development
Douglas H. Phanstiel et al.
MOLECULAR CELL (2017)
Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells
Jiho Choi et al.
NATURE (2017)
The interplay of epigenetic marks during stem cell differentiation and development
Yaser Atlasi et al.
NATURE REVIEWS GENETICS (2017)
Distinct Cell-Cycle Control in Two Different States of Mouse Pluripotency
Menno ter Huurne et al.
CELL STEM CELL (2017)
Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control
Denes Hnisz et al.
CELL (2016)
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
Hannah K. Long et al.
CELL (2016)
3D Chromosome Regulatory Landscape of Human Pluripotent Cells
Xiong Ji et al.
CELL STEM CELL (2016)
Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming
Jonathan A. Beagan et al.
CELL STEM CELL (2016)
Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
Peter Hugo Lodewijk Krijger et al.
CELL STEM CELL (2016)
Chromatin Domains: The Unit of Chromosome Organization
Jesse R. Dixon et al.
MOLECULAR CELL (2016)
Enhancers as non-coding RNA transcription units: recent insights and future perspectives
Wenbo Li et al.
NATURE REVIEWS GENETICS (2016)
Dynamic stem cell states: naive to primed pluripotency in rodents and humans
Leehee Weinberger et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)
4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments
Ramya Raviram et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
fluff: exploratory analysis and visualization of high-throughput sequencing data
Georgios Georgiou et al.
PEERJ (2016)
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Jonathan Cairns et al.
GENOME BIOLOGY (2016)
FourCSeq: analysis of 4C sequencing data
Felix A. Klein et al.
BIOINFORMATICS (2015)
Ground State Conditions Induce Rapid Reorganization of Core Pluripotency Factor Binding before Global Epigenetic Reprogramming
Christina Galonska et al.
CELL STEM CELL (2015)
Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency
Onkar Joshi et al.
CELL STEM CELL (2015)
Chromatin architecture reorganization during stem cell differentiation
Jesse R. Dixon et al.
NATURE (2015)
Competition between DNA methylation and transcription factors determines binding of NRF1
Silvia Domcke et al.
NATURE (2015)
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
Stefan Schoenfelder et al.
NATURE GENETICS (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Comparison of Hi-C results using in-solution versus in-nucleus ligation
Takashi Nagano et al.
GENOME BIOLOGY (2015)
Dynamics of gene silencing during X inactivation using allele-specific RNA-seq
Hendrik Marks et al.
GENOME BIOLOGY (2015)
Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution
Pelin Sahlen et al.
GENOME BIOLOGY (2015)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
Jill M. Dowen et al.
CELL (2014)
Reorganization of Enhancer Patterns in Transition from Naive to Primed Pluripotency
Christa Buecker et al.
CELL STEM CELL (2014)
Epigenomic Comparison Reveals Activation of Seed Enhancers during Transition from Naive to Primed Pluripotency
Daniel C. Factor et al.
CELL STEM CELL (2014)
Regulatory Principles of Pluripotency: From the Ground State Up
Jamie A. Hackett et al.
CELL STEM CELL (2014)
Enhancer loops appear stable during development and are associated with paused polymerase
Yad Ghavi-Helm et al.
NATURE (2014)
The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification
Thorsten Boroviak et al.
NATURE CELL BIOLOGY (2014)
Defining an essential transcription factor program for naive pluripotency
S. -J. Dunn et al.
SCIENCE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Latent Enhancers Activated by Stimulation in Differentiated Cells
Renato Ostuni et al.
CELL (2013)
Klf4 Organizes Long-Range Chromosomal Interactions with the Oct4 Locus inReprogramming andPluripotency
Zong Wei et al.
CELL STEM CELL (2013)
Long-Range Chromatin Contacts in Embryonic Stem Cells Reveal a Role for Pluripotency Factors and Polycomb Proteins in Genome Organization
Matthew Denholtz et al.
CELL STEM CELL (2013)
Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming
Effie Apostolou et al.
CELL STEM CELL (2013)
Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells
Ehsan Habibi et al.
CELL STEM CELL (2013)
The pluripotent genome in three dimensions is shaped around pluripotency factors
Elzo de Wit et al.
NATURE (2013)
A high-resolution map of the three-dimensional chromatin interactome in human cells
Fulai Jin et al.
NATURE (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
The Transcriptional and Epigenomic Foundations of Ground State Pluripotency
Hendrik Marks et al.
CELL (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation
Erik Splinter et al.
METHODS (2012)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
Transcriptome analysis by strand-specific sequencing of complementary DNA
Dmitri Parkhomchuk et al.
NUCLEIC ACIDS RESEARCH (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
The ground state of embryonic stem cell self-renewal
Qi-Long Ying et al.
NATURE (2008)
BAC TransgeneOmics:: a high-throughput method for exploration of protein function in mammals
Ina Poser et al.
NATURE METHODS (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Quantifying similarity between motifs
Shobhit Gupta et al.
GENOME BIOLOGY (2007)
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
YH Loh et al.
NATURE GENETICS (2006)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
The β-globin nuclear compartment in development and erythroid differentiation
RJ Palstra et al.
NATURE GENETICS (2003)
Antisense transcription through the Xist locus mediates Tsix function in embryonic stem cells
S Luikenhuis et al.
MOLECULAR AND CELLULAR BIOLOGY (2001)
分享论文
