4.8 Article

Transcriptional cofactors display specificity for distinct types of core promoters

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Resolving systematic errors in widely used enhancer activity assays in human cells

Felix Muerdter et al.

NATURE METHODS (2018)

Article Biotechnology & Applied Microbiology

Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution

Cosmas D. Arnold et al.

NATURE BIOTECHNOLOGY (2017)

Article Biochemistry & Molecular Biology

CBP Regulates Recruitment and Release of Promoter-Proximal RNA Polymerase II

Ann Boija et al.

MOLECULAR CELL (2017)

Article Multidisciplinary Sciences

A heterochromatin-dependent transcription machinery drives piRNA expression

Peter Refsing Andersen et al.

NATURE (2017)

Article Biochemistry & Molecular Biology

A sequence-specific core promoter-binding transcription factor recruits TRF2 to coordinately transcribe ribosomal protein genes

Douglas G. Baumann et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

The Drosophila embryo at single-cell transcriptome resolution

Nikos Karaiskos et al.

SCIENCE (2017)

Article Biochemistry & Molecular Biology

An Evolutionary Conserved Epigenetic Mark of Polycomb Response Elements Implemented by Trx/MLL/COMPASS

Ryan Rickels et al.

MOLECULAR CELL (2016)

Review Genetics & Heredity

Regulatory Enhancer-Core-Promoter Communication via Transcription Factors and Cofactors

Muhammad A. Zabidi et al.

TRENDS IN GENETICS (2016)

Article Genetics & Heredity

Absence of canonical marks of active chromatin in developmentally regulated genes

Slvia Perez-Lluch et al.

NATURE GENETICS (2015)

Article Genetics & Heredity

CBP binding outside of promoters and enhancers in Drosophila melanogaster

Philge Philip et al.

EPIGENETICS & CHROMATIN (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Multidisciplinary Sciences

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation

Muhammad A. Zabidi et al.

NATURE (2015)

Article Cell Biology

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

Yuan-Liang Wang et al.

GENES & DEVELOPMENT (2014)

Article Multidisciplinary Sciences

An atlas of active enhancers across human cell types and tissues

Robin Andersson et al.

NATURE (2014)

Article Multidisciplinary Sciences

Diversity and dynamics of the Drosophila transcriptome

James B. Brown et al.

NATURE (2014)

Article Multidisciplinary Sciences

Comparative analysis of metazoan chromatin organization

Joshua W. K. Ho et al.

NATURE (2014)

Article Multidisciplinary Sciences

Two independent transcription initiation codes overlap on vertebrate core promoters

Vanja Haberle et al.

NATURE (2014)

Article Multidisciplinary Sciences

A promoter-level mammalian expression atlas

Alistair R. R. Forrest et al.

NATURE (2014)

Review Cell Biology

In search of the determinants of enhancer-promoter interaction specificity

Joris van Arensbergen et al.

TRENDS IN CELL BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Editorial Material Biochemistry & Molecular Biology

Transitions for Regulating Early Transcription

Margaux Michel et al.

Article Biochemistry & Molecular Biology

Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq

Tobias Straub et al.

GENOME RESEARCH (2013)

Article Multidisciplinary Sciences

Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq

Cosmas D. Arnold et al.

SCIENCE (2013)

Article Biotechnology & Applied Microbiology

The BET protein FSH functionally interacts with ASH1 to orchestrate global gene activity in Drosophila

Tobias Kockmann et al.

GENOME BIOLOGY (2013)

Review Genetics & Heredity

Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

Karen Adelman et al.

NATURE REVIEWS GENETICS (2012)

Article Biochemistry & Molecular Biology

Genome-wide analysis of promoter architecture in Drosophila melanogaster

Roger A. Hoskins et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing

Anitha D. Jayaprakash et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Biochemical Research Methods

Using GOstats to test gene lists for GO term association

S. Falcon et al.

BIOINFORMATICS (2007)

Article Biotechnology & Applied Microbiology

Comparative genomics of Drosophila and human core promoters

Peter C. FitzGerald et al.

GENOME BIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Bioconductor: open software development for computational biology and bioinformatics

RC Gentleman et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

The human genome browser at UCSC

WJ Kent et al.

GENOME RESEARCH (2002)