相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genomics of the origin and evolution of Citrus
Guohong Albert Wu et al.
NATURE (2018)
Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction
Xia Wang et al.
NATURE GENETICS (2017)
Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.)
Flavia Mascagni et al.
BMC GENOMICS (2017)
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
G. Albert Wu et al.
NATURE BIOTECHNOLOGY (2014)
Genome-Wide Comparative Analysis of 20 Miniature Inverted-Repeat Transposable Element Families in Brassica rapa and B-oleracea
Perumal Sampath et al.
PLOS ONE (2014)
Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes
Yujun Han et al.
BMC GENOMICS (2013)
Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution
Moaine El Baidouri et al.
GENOME BIOLOGY AND EVOLUTION (2013)
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The draft genome of sweet orange (Citrus sinensis)
Qiang Xu et al.
NATURE GENETICS (2013)
Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns
Douglas S. Domingues et al.
BMC GENOMICS (2012)
Miniature Inverted-Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa
Chen Lu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus
Manosh Kumar Biswas et al.
MOLECULAR BIOLOGY REPORTS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges
Eugenio Butelli et al.
PLANT CELL (2012)
Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales
Tao Shi et al.
ANNALS OF BOTANY (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
Yujun Han et al.
NUCLEIC ACIDS RESEARCH (2010)
Bifurcation and Enhancement of Autonomous-Nonautonomous Retrotransposon Partnership through LTR Swapping in Soybean
Jianchang Du et al.
PLANT CELL (2010)
Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison
Jianchang Du et al.
PLANT JOURNAL (2010)
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
Zhixi Tian et al.
GENOME RESEARCH (2009)
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson et al.
NATURE (2009)
Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
Ken Naito et al.
NATURE (2009)
TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences
Yujun Han et al.
NUCLEIC ACIDS RESEARCH (2009)
Fine-grained annotation and classification of de novo predicted LTR retrotransposons
Sascha Steinbiss et al.
NUCLEIC ACIDS RESEARCH (2009)
Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome
Tatiana Zerjal et al.
PLANT MOLECULAR BIOLOGY (2009)
Tuned for Transposition: Molecular Determinants Underlying the Hyperactivity of a Stowaway MITE
Guojun Yang et al.
SCIENCE (2009)
Development of genomic resources for Citrus clementina: Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences
Javier Terol et al.
BMC GENOMICS (2008)
LTR retrotransposon landscape in Medicago truncatula:: more rapid removal than in rice
Hao Wang et al.
BMC GENOMICS (2008)
A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp japonica
Nobuhiko Oki et al.
GENES & GENETIC SYSTEMS (2008)
Dual coding of siRNAs and miRNAs by plant transposable elements
Jittima Piriyapongsa et al.
RNA (2008)
A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit
Han Xiao et al.
SCIENCE (2008)
A unified classification system for eukaryotic transposable elements
Thomas Wicker et al.
NATURE REVIEWS GENETICS (2007)
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
Zhao Xu et al.
NUCLEIC ACIDS RESEARCH (2007)
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
Thomas Wicker et al.
GENOME RESEARCH (2007)
Origin and evolution of human microRNAs from transposable elements
Jittima Piriyapongsa et al.
GENETICS (2007)
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
Jennifer S. Hawkins et al.
GENOME RESEARCH (2006)
Identifying repeat domains in large genomes
DG Zhi et al.
GENOME BIOLOGY (2006)
A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter
GJ Yang et al.
PLANT CELL (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Rapid recent growth and divergence of rice nuclear genomes
JX Ma et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Identification and genomic distribution of gypsy like retrotransposons in Citrus and Poncirus
GP Bernet et al.
THEORETICAL AND APPLIED GENETICS (2003)
被撤回的出版物: Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing (Retracted Article. See vol 301, pg 1069, 2003)
V Schramke et al.
SCIENCE (2003)
Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.
C Vitte et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
An active DNA transposon family in rice
N Jiang et al.
NATURE (2003)
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
K Kashkush et al.
NATURE GENETICS (2003)
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
KM Devos et al.
GENOME RESEARCH (2002)
Mechanisms and rates of genome expansion and contraction in flowering plants
JL Bennetzen
GENETICA (2002)
Plant transposable elements: Where genetics meets genomics
C Feschotte et al.
NATURE REVIEWS GENETICS (2002)